Gene detail

Detailed information of evm.model.Ap4.24 in Astrangia poculata

Genomic Location: Ap4:280157...293075
NR annotation: KAJ7389428.1, hypothetical protein OS493_031672 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.24

atgtggaaacaaccgagaaacattttgctggttatgctacagttaacgcttttgccagtaacgttctgtgacttacgttcgttcacgtttcaacgtttcaactgcccaaaaagctatacatttacaaacgcacgacttcaaggcggacttcaagccggggaatttagaagactgggcccgcctgatgacacggagctgtgcgtccagcggtgttgcgatgcgaggtcatgtgacctggtggcgtggattggtgatcattgttactcagtgtcttgtgtgaatcgtgacatgtgcaagcccgtgaggctaccaagttatcataaaggcatgagactgctgtacattgcttcgagagaaaacgccgaggatgaagttgaacccaaccggagggaaataagtgaattgcttcacttgtcgccgaatgacgcaggatctgtcaacgttacaaagatgttatcttcctacagtgcaactcaggagccagctgcgcttaaatcctctaaaaacgtcaggagaataattcgctcacttgaagaaatcgaagacgaagaaggctctggtgccactgaaagcaaatccgacagcgaaagtgctgacgataacgaaaacttttcattcagcggcaattactacgagcgcaactctgaaagtatgaaattcaaaatggaggagccttccggcgaggaggactgggatggagaactgattggcgaatcaggtgccgagcaggatgatgacgtaactgatgacatcattcagactcaaacacatggcgtgactgcagtaaaacgaacagaaatggcgtctgtggttaacccgagtgatatagaagaatttgaatcggattcgaactatggggctgccgaaaattttggggaagacgaaaacacagttgtcgattctagttcttcaggagctagtggcgctaatgttttagacgaaatgcacgatcagcatccaggtgggtcaggaaaaataaacaagactattatgcgtgaggtgcaacgtaacttacacaaagtgtggcgctacgcctcttcaggtaaaaacctcgacatgatttctaaaggacccaaaggaaaaaaggaggaacgaaaactacaggagatttataacctggtaataaaacatgaatctggcggagcaggacccaaagaggctgtctctggagaagcgagtgggttgagtttggaatatgctgatgtctcgggtgaaagcgataaggatgaagatgaaacatatgaaataggatctgctatctttcacgaaagccaagataggaaacgcgtgaattcggggaatgataatgatgtttctggggagagcagtggacttggggattcttcggaggtttctggcgacagtgccagtggttctggggttgtaaacaagaaactgttgaaagaagttgaacataacttgcacaaagtatggagatacgcagcgcctaaaaaggacttagacatggtagcaaagggtcccaagggagaggaggaagagcaaaaagttgaaaagatttacaatatgatcagcaagcacgaatctgggtcggcgtttattgattatgaaatgagaaagaaagagaaatcggtaaatgacagcgagcaaactcgtaagcatcatcctaggcataaaagtcgcaaaagcagggtcaaattaaccaagaccgagcataatgtcaccgaggcgaaattgtatagactgcagaaagcaaggaaatacaagtacaacaagaatttgaaaagtctcaaaccctggggtatgggaatggggaagtcaacgcgaaaaccgaacggggtgtatgtaaaaagaattggcagaaaaggcaaggcaggccgggatagaggcgatactcttgctattcttggggaagaaatgaaagagttagctcccagcgacgataatgatgacaaaacaaaagagaagtcaaaagaaaataagcttagtaagtcaaaatctgataaaggggaaactgcgacagagagcttagtcaatgaaacagctagtcaagaagctgaagcgaacaatgcaccagataaatctcaaagtcaaaagatcgtattggataaaaagaaaccgtttgacaaaacacaacttgaaatcggaaaacagttggaggagttgattttgaacagaatggcgcaacttggaagtcaaaggctcgaggataaacgtaaaggcaaacaagagcatttaaaagatagcaaagagaaggatgataaaacagaaacggagaaagaacctcaaaaaggcaagtgcaacatatttactggcccacaacgaaagaaagacaaattgctaatggaactagagaaactaaagttcttgaacgggccttcgactgtttataaggacagtaggtttgtgtatctcaagcagtgtgggctttatgttgaggaatataatgtatccaagactcgtgcttcgtggaacaatgatttattctcaccctattcatatctttatgagatgcctaaaaactatcacacatgtaactcgtctgtaagaatgaaccgcacagatctgcggggagatgtcttcttgagcttccgggtcatgtccataaaaggaagtactatgacaaacaatgctaacatctgtgagaagtattgctgccaagaaccgcgctgccaggcctggacactaagattgcaacaggcagacacggctaactgtcctaaaggatcgttttgctgctggctaaagagtgccataccatcacccatccgggactcagaacactgtacatccgggatagtgcaccgcgagagcaccaaacatccaccagccggcatgcggtccgcagtacctctcggaggactgggcactggttcatttgagttacgtgcggatgggacaatacacgaatggactattgagaaccagtctcctggcggctcagcaaaactcaacaaaggagccctgaaccttgctgtgttcggcgtaagagtagcagaaccagacaacaataagagcaatgctgcactattgagaatccatgcaccacatgggtaccctggtgtggagagtttgtcatactctgggtcctaccctgtcagcaaattgactcctggtggttcaataacagaagacattgacatgagcctgtatgccttcccatcattccacgtgagagatcgtttcaagtctgcggtccccgcggttgctttcaccttgggcatgcgcaataaggccgataaacctctggatgtttcgttcgtgttcaacttgcctcttgggcaacaggaggatacaatcagagtaggagataattatggcgaagttgtatttacaagaatgataaaaccttcagattgcgcgcatgcgtgctctaaaatgcccaaatgtatgtcgtggacaaccaatgggcccacttcatgtctgttgaaggacaaaatgccgctacacgcctgggccacgggcatcgtgtcaggccttaagggagactggaccgttcaagactccatgttgacttgccacaggcctggatttttcccgcagagcggaagcacgacattatatgcagtggacgatgaggatagcttgggatctttcgctgtagcagacgactttggtgacatctggaagaacttctcaaacacaggacaaattggtgttcccaagtcacttaataaaactggactctacggcgcggcatccgtcaagacacaactccaacctggggagaaaaaatctctgacgttaattatgtcgtggtactatcctcaccgtgatttagccaaagttcatgttggtaatctgtactcggcactgtttaaatcaagtcaggatgctgcacagcacatgcgcaaggatctggtcaaatcggtaatcgatatccaatcgtggcacgaaccgatcgtcggatccgaacccgttaaaaagggcccaatcaacgacaaagtaaaacatataccaaacagtccggaagaaaacaaagtcaacgggcttcctgattggctaaaggacttgcttgttaacagtatgagcttttggaggtctgggttctggactgaggatggaagatggcgccagtgggaggcttatgactgtaatgatatcgacaccattcaaaatgacatgcagaggattattccatacacactgttctttcctgaactagtgaaagatcttttgacatcttgggccgacaatcagtattccagtggtatgctgcaggaagcgctcacatctggctgtttggggccgacaggaaagctggattacgctggtggccgagtaatggcggacactacaaccatgttcattgtaggattgtatcactactaccagtggactggtgaccaggctacactcaatcgactttggccggctgcaaaaagagcgatggcttgggtcatggtagattccacaaaaggtactggtcttccctttaggaaagtcagcacttatgacatcgtggcactggacaaatatgatcatgacgcttataactcctttgtttacctcttggctcttcgtgccgcgcaggaactaggaacgataaccaatgataccaagtttgtgtcgaccgtccgtcaatcatttgatcatgcacagaaacgagtggatgtcgagctgtgggacaaagcaaagcagtattaccacgcctggtgggatatggaatacgggtcacccgagtggataatgtctgattccttgtatgggcaagtctgggcttatagcctcggtctgggggatttggttccgcgcagtaaactgaaagcgcatttatcgaaagagattgagaggaacgattctccttttggacttaaagttttaaacacaggagcagcggaactcaccctcgaggatacgtcaatcattttaagccgtcacattcccggatgtaagtcgctggagaatattacgaagcataattctgtttggatgggagccgacgctgattggtcaactcttatgctgcatttggacacggatcccataattgccttaaatcgagcaaagaaatcgcttgatcactggcgttccaccttaaatgatcaatggaacgtccacggccttatttcaagcaatggctacggagtggacgggctcccatgggccacctcgcattattcctttcacatggtactctggcacatcccgctggcgttgtcagggcaacagtacttcgctcccaatgcatcattgactttctggcccaagtttccaattccatttaatttgcctttcttcacgcctaaagcgtcggggacaattgagggagcatacgtgaagggtaacgatagagaagaagatgacaacgaagaagaagaaatgtttacgttcactgtcaaatcaggtgaactgagccttaaagagttggctattttaggaagcaggtatggaaaaggagaaatatcaatcaaacaaggagaggcagtgacctggtcccgcccaaaacaggatgtcaaaaacattttacaacagctgtga

Transcript

evm.model.Ap4.24

ATGTGGAAACAACCGAGAAACATTTTGCTGGTTATGCTACAGTTAACGCTTTTGCCAGTAACGTTCTGTGACTTACGTTCGTTCACGTTTCAACGTTTCAACTGCCCAAAAAGCTATACATTTACAAACGCACGACTTCAAGGCGGACTTCAAGCCGGGGAATTTAGAAGACTGGGCCCGCCTGATGACACGGAGCTGTGCGTCCAGCGGTGTTGCGATGCGAGGTCATGTGACCTGGTGGCGTGGATTGGTGATCATTGTTACTCAGTGTCTTGTGTGAATCGTGACATGTGCAAGCCCGTGAGGCTACCAAGTTATCATAAAGGCATGAGACTGCTGTACATTGCTTCGAGAGAAAACGCCGAGGATGAAGTTGAACCCAACCGGAGGGAAATAAGTGAATTGCTTCACTTGTCGCCGAATGACGCAGGATCTGTCAACGTTACAAAGATGTTATCTTCCTACAGTGCAACTCAGGAGCCAGCTGCGCTTAAATCCTCTAAAAACGTCAGGAGAATAATTCGCTCACTTGAAGAAATCGAAGACGAAGAAGGCTCTGGTGCCACTGAAAGCAAATCCGACAGCGAAAGTGCTGACGATAACGAAAACTTTTCATTCAGCGGCAATTACTACGAGCGCAACTCTGAAAGTATGAAATTCAAAATGGAGGAGCCTTCCGGCGAGGAGGACTGGGATGGAGAACTGATTGGCGAATCAGGTGCCGAGCAGGATGATGACGTAACTGATGACATCATTCAGACTCAAACACATGGCGTGACTGCAGTAAAACGAACAGAAATGGCGTCTGTGGTTAACCCGAGTGATATAGAAGAATTTGAATCGGATTCGAACTATGGGGCTGCCGAAAATTTTGGGGAAGACGAAAACACAGTTGTCGATTCTAGTTCTTCAGGAGCTAGTGGCGCTAATGTTTTAGACGAAATGCACGATCAGCATCCAGGTGGGTCAGGAAAAATAAACAAGACTATTATGCGTGAGGTGCAACGTAACTTACACAAAGTGTGGCGCTACGCCTCTTCAGGTAAAAACCTCGACATGATTTCTAAAGGACCCAAAGGAAAAAAGGAGGAACGAAAACTACAGGAGATTTATAACCTGGTAATAAAACATGAATCTGGCGGAGCAGGACCCAAAGAGGCTGTCTCTGGAGAAGCGAGTGGGTTGAGTTTGGAATATGCTGATGTCTCGGGTGAAAGCGATAAGGATGAAGATGAAACATATGAAATAGGATCTGCTATCTTTCACGAAAGCCAAGATAGGAAACGCGTGAATTCGGGGAATGATAATGATGTTTCTGGGGAGAGCAGTGGACTTGGGGATTCTTCGGAGGTTTCTGGCGACAGTGCCAGTGGTTCTGGGGTTGTAAACAAGAAACTGTTGAAAGAAGTTGAACATAACTTGCACAAAGTATGGAGATACGCAGCGCCTAAAAAGGACTTAGACATGGTAGCAAAGGGTCCCAAGGGAGAGGAGGAAGAGCAAAAAGTTGAAAAGATTTACAATATGATCAGCAAGCACGAATCTGGGTCGGCGTTTATTGATTATGAAATGAGAAAGAAAGAGAAATCGGTAAATGACAGCGAGCAAACTCGTAAGCATCATCCTAGGCATAAAAGTCGCAAAAGCAGGGTCAAATTAACCAAGACCGAGCATAATGTCACCGAGGCGAAATTGTATAGACTGCAGAAAGCAAGGAAATACAAGTACAACAAGAATTTGAAAAGTCTCAAACCCTGGGGTATGGGAATGGGGAAGTCAACGCGAAAACCGAACGGGGTGTATGTAAAAAGAATTGGCAGAAAAGGCAAGGCAGGCCGGGATAGAGGCGATACTCTTGCTATTCTTGGGGAAGAAATGAAAGAGTTAGCTCCCAGCGACGATAATGATGACAAAACAAAAGAGAAGTCAAAAGAAAATAAGCTTAGTAAGTCAAAATCTGATAAAGGGGAAACTGCGACAGAGAGCTTAGTCAATGAAACAGCTAGTCAAGAAGCTGAAGCGAACAATGCACCAGATAAATCTCAAAGTCAAAAGATCGTATTGGATAAAAAGAAACCGTTTGACAAAACACAACTTGAAATCGGAAAACAGTTGGAGGAGTTGATTTTGAACAGAATGGCGCAACTTGGAAGTCAAAGGCTCGAGGATAAACGTAAAGGCAAACAAGAGCATTTAAAAGATAGCAAAGAGAAGGATGATAAAACAGAAACGGAGAAAGAACCTCAAAAAGGCAAGTGCAACATATTTACTGGCCCACAACGAAAGAAAGACAAATTGCTAATGGAACTAGAGAAACTAAAGTTCTTGAACGGGCCTTCGACTGTTTATAAGGACAGTAGGTTTGTGTATCTCAAGCAGTGTGGGCTTTATGTTGAGGAATATAATGTATCCAAGACTCGTGCTTCGTGGAACAATGATTTATTCTCACCCTATTCATATCTTTATGAGATGCCTAAAAACTATCACACATGTAACTCGTCTGTAAGAATGAACCGCACAGATCTGCGGGGAGATGTCTTCTTGAGCTTCCGGGTCATGTCCATAAAAGGAAGTACTATGACAAACAATGCTAACATCTGTGAGAAGTATTGCTGCCAAGAACCGCGCTGCCAGGCCTGGACACTAAGATTGCAACAGGCAGACACGGCTAACTGTCCTAAAGGATCGTTTTGCTGCTGGCTAAAGAGTGCCATACCATCACCCATCCGGGACTCAGAACACTGTACATCCGGGATAGTGCACCGCGAGAGCACCAAACATCCACCAGCCGGCATGCGGTCCGCAGTACCTCTCGGAGGACTGGGCACTGGTTCATTTGAGTTACGTGCGGATGGGACAATACACGAATGGACTATTGAGAACCAGTCTCCTGGCGGCTCAGCAAAACTCAACAAAGGAGCCCTGAACCTTGCTGTGTTCGGCGTAAGAGTAGCAGAACCAGACAACAATAAGAGCAATGCTGCACTATTGAGAATCCATGCACCACATGGGTACCCTGGTGTGGAGAGTTTGTCATACTCTGGGTCCTACCCTGTCAGCAAATTGACTCCTGGTGGTTCAATAACAGAAGACATTGACATGAGCCTGTATGCCTTCCCATCATTCCACGTGAGAGATCGTTTCAAGTCTGCGGTCCCCGCGGTTGCTTTCACCTTGGGCATGCGCAATAAGGCCGATAAACCTCTGGATGTTTCGTTCGTGTTCAACTTGCCTCTTGGGCAACAGGAGGATACAATCAGAGTAGGAGATAATTATGGCGAAGTTGTATTTACAAGAATGATAAAACCTTCAGATTGCGCGCATGCGTGCTCTAAAATGCCCAAATGTATGTCGTGGACAACCAATGGGCCCACTTCATGTCTGTTGAAGGACAAAATGCCGCTACACGCCTGGGCCACGGGCATCGTGTCAGGCCTTAAGGGAGACTGGACCGTTCAAGACTCCATGTTGACTTGCCACAGGCCTGGATTTTTCCCGCAGAGCGGAAGCACGACATTATATGCAGTGGACGATGAGGATAGCTTGGGATCTTTCGCTGTAGCAGACGACTTTGGTGACATCTGGAAGAACTTCTCAAACACAGGACAAATTGGTGTTCCCAAGTCACTTAATAAAACTGGACTCTACGGCGCGGCATCCGTCAAGACACAACTCCAACCTGGGGAGAAAAAATCTCTGACGTTAATTATGTCGTGGTACTATCCTCACCGTGATTTAGCCAAAGTTCATGTTGGTAATCTGTACTCGGCACTGTTTAAATCAAGTCAGGATGCTGCACAGCACATGCGCAAGGATCTGGTCAAATCGGTAATCGATATCCAATCGTGGCACGAACCGATCGTCGGATCCGAACCCGTTAAAAAGGGCCCAATCAACGACAAAGTAAAACATATACCAAACAGTCCGGAAGAAAACAAAGTCAACGGGCTTCCTGATTGGCTAAAGGACTTGCTTGTTAACAGTATGAGCTTTTGGAGGTCTGGGTTCTGGACTGAGGATGGAAGATGGCGCCAGTGGGAGGCTTATGACTGTAATGATATCGACACCATTCAAAATGACATGCAGAGGATTATTCCATACACACTGTTCTTTCCTGAACTAGTGAAAGATCTTTTGACATCTTGGGCCGACAATCAGTATTCCAGTGGTATGCTGCAGGAAGCGCTCACATCTGGCTGTTTGGGGCCGACAGGAAAGCTGGATTACGCTGGTGGCCGAGTAATGGCGGACACTACAACCATGTTCATTGTAGGATTGTATCACTACTACCAGTGGACTGGTGACCAGGCTACACTCAATCGACTTTGGCCGGCTGCAAAAAGAGCGATGGCTTGGGTCATGGTAGATTCCACAAAAGGTACTGGTCTTCCCTTTAGGAAAGTCAGCACTTATGACATCGTGGCACTGGACAAATATGATCATGACGCTTATAACTCCTTTGTTTACCTCTTGGCTCTTCGTGCCGCGCAGGAACTAGGAACGATAACCAATGATACCAAGTTTGTGTCGACCGTCCGTCAATCATTTGATCATGCACAGAAACGAGTGGATGTCGAGCTGTGGGACAAAGCAAAGCAGTATTACCACGCCTGGTGGGATATGGAATACGGGTCACCCGAGTGGATAATGTCTGATTCCTTGTATGGGCAAGTCTGGGCTTATAGCCTCGGTCTGGGGGATTTGGTTCCGCGCAGTAAACTGAAAGCGCATTTATCGAAAGAGATTGAGAGGAACGATTCTCCTTTTGGACTTAAAGTTTTAAACACAGGAGCAGCGGAACTCACCCTCGAGGATACGTCAATCATTTTAAGCCGTCACATTCCCGGATGTAAGTCGCTGGAGAATATTACGAAGCATAATTCTGTTTGGATGGGAGCCGACGCTGATTGGTCAACTCTTATGCTGCATTTGGACACGGATCCCATAATTGCCTTAAATCGAGCAAAGAAATCGCTTGATCACTGGCGTTCCACCTTAAATGATCAATGGAACGTCCACGGCCTTATTTCAAGCAATGGCTACGGAGTGGACGGGCTCCCATGGGCCACCTCGCATTATTCCTTTCACATGGTACTCTGGCACATCCCGCTGGCGTTGTCAGGGCAACAGTACTTCGCTCCCAATGCATCATTGACTTTCTGGCCCAAGTTTCCAATTCCATTTAATTTGCCTTTCTTCACGCCTAAAGCGTCGGGGACAATTGAGGGAGCATACGTGAAGGGTAACGATAGAGAAGAAGATGACAACGAAGAAGAAGAAATGTTTACGTTCACTGTCAAATCAGGTGAACTGAGCCTTAAAGAGTTGGCTATTTTAGGAAGCAGGTATGGAAAAGGAGAAATATCAATCAAACAAGGAGAGGCAGTGACCTGGTCCCGCCCAAAACAGGATGTCAAAAACATTTTACAACAGCTGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12215 all species →	Glyco_hydr_116N	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term	Family	Interproscan
PF04685 all species →	DUF608	Glycosyl-hydrolase family 116, catalytic region	Repeat	Interproscan
PF14295 all species →	PAN_4	PAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052566 all species →	Family	Non-lysosomal glucosylceramidase	Interproscan
IPR024462 all species →	Domain	Glycosyl-hydrolase family 116, N-terminal	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR006775 all species →	Domain	Glycosyl-hydrolase family 116, catalytic region	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12654 all species →	BILE ACID BETA-GLUCOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.24.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.