Gene detail

Detailed information of evm.model.Ap4.2473 in Astrangia poculata

Genomic Location: Ap4:21639868...21647912
NR annotation: XP_022810118.1, uncharacterized protein LOC111347127 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.2473

atgactgatataccaacaactgcaggtgataaaacttcccagaaagaccaaccagccaccggcttaccaacaactgcaggtgataaaacttctcaggacgaccaaccagctactggcatgctaacaactgcaggtgataaaacttcccagaaagaccaaccagccatcggcttaccaacaactgcaggtgataaaacttctcaggacgaccaaccagctactggcatgttgacaactgcaggtgataaaacttcccagaaagaccaaccagccaccggcttaccaacaactgcagatgaccgtgaggccaacagtagactggagatactaagttggctcaaggtaaaattcaaaatggcgaccaagaaagtgtgcaagaaggataagaatagagagagtctcgacgatctgcttcaagaagcaactaatttattggacgaaaaagaaaaatcacggaagagaaagaaaggcgagagtgattttgaattttacagagactccgttaccggattaagggcattgaaacatgtgcagagagcgcgcgccctggcggatcaggctgcgagccaggaaaattctgcgggaccttctttatcgaatgaatggcctccccctcctcctcccgttcagcagtctaggggaactttgttttctactttgtggaattcgattaggtctcctagggccgcgtctcagagacatccattaagtgctattcccactccaagtgacgctaacgagagagctttttcattttgtgctggtgatcatagctccgattccgacgaagaggtaatttatgagaacgtgccgagagttagccagtctagtcaaagccgtgatagtcgtgaagatcgtgaaaatcacgaaaaccgcgaggttgttgaagatcatatagatcctcaaaataacgaacttagtgaaggtagtctagatcttgaaagttcggacgaggagttcagtaggttgccctcagaaactattagttcagagagtgaagacaattctgttgagcctgtttgcgctgcgatggaaaacgaagttagtcagttgcgtgatgcggttgagcgaatgcgtacatcgctaaattcgcaacctagcagaactttcagtataaagtcatcagttacgtttccaatttttcgaggagatgaatgtgaggacgtacacgaattcattagtaattataagagggctgctcgattaaatggctggaatgaagaaaacttggcgttgggtcttcctctttatttgaagggtcacgcgagtgcgtggttcaaaactttgcccacaccggacgagatgagttttgacgaattatctcgagagctaataacgcatttcgcctctggagctagcgagtggcgcattagacaaactctcagtcaacgccgccggttggaaaaagaaaccgttgctgactattcttacagtctccggacaaattgtgcaaagttaaatttacccaggagcgaatggacgcactatttcgtacaaggtcttttacctgaaatccgcgagtacgtagttttgcaacaaccagaaaatttggaatcagcagaaaattttgcaaagcttaaagagtccgttttgactaattcgggaaaacgtgtggaatttgaccctaaggaggtttcggctaagatacttgatgagctctcgaaagctgttaatggcaaagacaaaaccgtaagtgctgtagatcgaagagacccttatgtcagcaaatctgacatgaaacaaattatcagagaagaatttcaggaattaatgggaaactctgcttcaagacctaggcctattcagcgttttggtcaaggttttccgacgagaggttttcgtactcgttctggaaatcctgtttgtttcaattgtggcaaacaaggccacacgtactataattgtcgtgcaaatccggacccaagggtcccgcgttttggtcggggaagaccaaacaatttctcgcgtcagcaacaagatactggtgcagctgtcacggctgttagtgctgatgtttggggcaaatacttatctcatacatgtcctgatttagatgatactagtgttgaaggcgaaaacccttttccgtttggtgatttcgatacccctgattttgttgatgctgaaaatggggatgatacttttaaatgttcagtgcatgccgatttttcttttgttatccctccacagacagaagttgtagttcctgctagattgaatgcctgtcccaaaacatcaaatgttactggttttgttactcctagtactaccttgcctgaaaagtattctatttttggagcggcagagctcgttcttgtttctgatgattgtacaattccagtgagagtagttaatccttcatttcaaccggttaagatttatcgtagaactagactaggtgattttgaggaggtggattcatctattgcaacctttgagttaaattcattagagcattctcaacagtcacctttgccatctggtagcgactctcaaagcgactattcgaacttgccagatttgtctgattctgtattatctgataccgataaagtcaagtttagggaactctttaggcaacctgttgggcaggctgcttaccagcctcagtctcagccagaccagtttacagtcgataaccaaacagttttcaatgctgaaggaattctcaaacgtcgtaaacgtaaaggcaagaacttttatttagtcaaatggcttggttaccctaaaagtcagtctacctgggaaccagaagagaatgttttggataagcatttaattgaaaactttgagaagtctcaaaatctcaaatag

Transcript

evm.model.Ap4.2473

ATGACTGATATACCAACAACTGCAGGTGATAAAACTTCCCAGAAAGACCAACCAGCCACCGGCTTACCAACAACTGCAGGTGATAAAACTTCTCAGGACGACCAACCAGCTACTGGCATGCTAACAACTGCAGGTGATAAAACTTCCCAGAAAGACCAACCAGCCATCGGCTTACCAACAACTGCAGGTGATAAAACTTCTCAGGACGACCAACCAGCTACTGGCATGTTGACAACTGCAGGTGATAAAACTTCCCAGAAAGACCAACCAGCCACCGGCTTACCAACAACTGCAGATGACCGTGAGGCCAACAGTAGACTGGAGATACTAAGTTGGCTCAAGGTAAAATTCAAAATGGCGACCAAGAAAGTGTGCAAGAAGGATAAGAATAGAGAGAGTCTCGACGATCTGCTTCAAGAAGCAACTAATTTATTGGACGAAAAAGAAAAATCACGGAAGAGAAAGAAAGGCGAGAGTGATTTTGAATTTTACAGAGACTCCGTTACCGGATTAAGGGCATTGAAACATGTGCAGAGAGCGCGCGCCCTGGCGGATCAGGCTGCGAGCCAGGAAAATTCTGCGGGACCTTCTTTATCGAATGAATGGCCTCCCCCTCCTCCTCCCGTTCAGCAGTCTAGGGGAACTTTGTTTTCTACTTTGTGGAATTCGATTAGGTCTCCTAGGGCCGCGTCTCAGAGACATCCATTAAGTGCTATTCCCACTCCAAGTGACGCTAACGAGAGAGCTTTTTCATTTTGTGCTGGTGATCATAGCTCCGATTCCGACGAAGAGGTAATTTATGAGAACGTGCCGAGAGTTAGCCAGTCTAGTCAAAGCCGTGATAGTCGTGAAGATCGTGAAAATCACGAAAACCGCGAGGTTGTTGAAGATCATATAGATCCTCAAAATAACGAACTTAGTGAAGGTAGTCTAGATCTTGAAAGTTCGGACGAGGAGTTCAGTAGGTTGCCCTCAGAAACTATTAGTTCAGAGAGTGAAGACAATTCTGTTGAGCCTGTTTGCGCTGCGATGGAAAACGAAGTTAGTCAGTTGCGTGATGCGGTTGAGCGAATGCGTACATCGCTAAATTCGCAACCTAGCAGAACTTTCAGTATAAAGTCATCAGTTACGTTTCCAATTTTTCGAGGAGATGAATGTGAGGACGTACACGAATTCATTAGTAATTATAAGAGGGCTGCTCGATTAAATGGCTGGAATGAAGAAAACTTGGCGTTGGGTCTTCCTCTTTATTTGAAGGGTCACGCGAGTGCGTGGTTCAAAACTTTGCCCACACCGGACGAGATGAGTTTTGACGAATTATCTCGAGAGCTAATAACGCATTTCGCCTCTGGAGCTAGCGAGTGGCGCATTAGACAAACTCTCAGTCAACGCCGCCGGTTGGAAAAAGAAACCGTTGCTGACTATTCTTACAGTCTCCGGACAAATTGTGCAAAGTTAAATTTACCCAGGAGCGAATGGACGCACTATTTCGTACAAGGTCTTTTACCTGAAATCCGCGAGTACGTAGTTTTGCAACAACCAGAAAATTTGGAATCAGCAGAAAATTTTGCAAAGCTTAAAGAGTCCGTTTTGACTAATTCGGGAAAACGTGTGGAATTTGACCCTAAGGAGGTTTCGGCTAAGATACTTGATGAGCTCTCGAAAGCTGTTAATGGCAAAGACAAAACCGTAAGTGCTGTAGATCGAAGAGACCCTTATGTCAGCAAATCTGACATGAAACAAATTATCAGAGAAGAATTTCAGGAATTAATGGGAAACTCTGCTTCAAGACCTAGGCCTATTCAGCGTTTTGGTCAAGGTTTTCCGACGAGAGGTTTTCGTACTCGTTCTGGAAATCCTGTTTGTTTCAATTGTGGCAAACAAGGCCACACGTACTATAATTGTCGTGCAAATCCGGACCCAAGGGTCCCGCGTTTTGGTCGGGGAAGACCAAACAATTTCTCGCGTCAGCAACAAGATACTGGTGCAGCTGTCACGGCTGTTAGTGCTGATGTTTGGGGCAAATACTTATCTCATACATGTCCTGATTTAGATGATACTAGTGTTGAAGGCGAAAACCCTTTTCCGTTTGGTGATTTCGATACCCCTGATTTTGTTGATGCTGAAAATGGGGATGATACTTTTAAATGTTCAGTGCATGCCGATTTTTCTTTTGTTATCCCTCCACAGACAGAAGTTGTAGTTCCTGCTAGATTGAATGCCTGTCCCAAAACATCAAATGTTACTGGTTTTGTTACTCCTAGTACTACCTTGCCTGAAAAGTATTCTATTTTTGGAGCGGCAGAGCTCGTTCTTGTTTCTGATGATTGTACAATTCCAGTGAGAGTAGTTAATCCTTCATTTCAACCGGTTAAGATTTATCGTAGAACTAGACTAGGTGATTTTGAGGAGGTGGATTCATCTATTGCAACCTTTGAGTTAAATTCATTAGAGCATTCTCAACAGTCACCTTTGCCATCTGGTAGCGACTCTCAAAGCGACTATTCGAACTTGCCAGATTTGTCTGATTCTGTATTATCTGATACCGATAAAGTCAAGTTTAGGGAACTCTTTAGGCAACCTGTTGGGCAGGCTGCTTACCAGCCTCAGTCTCAGCCAGACCAGTTTACAGTCGATAACCAAACAGTTTTCAATGCTGAAGGAATTCTCAAACGTCGTAAACGTAAAGGCAAGAACTTTTATTTAGTCAAATGGCTTGGTTACCCTAAAAGTCAGTCTACCTGGGAACCAGAAGAGAATGTTTTGGATAAGCATTTAATTGAAAACTTTGAGAAGTCTCAAAATCTCAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXV1	Chromobox protein homolog 8 OS=Mus musculus OX=10090 GN=Cbx8 PE=1 SV=1
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1
P60889	Chromobox protein homolog 7 OS=Rattus norvegicus OX=10116 GN=Cbx7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000748 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF03732 all species →	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR005162 all species →	Domain	Retrotransposon gag domain	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33223 all species →	CCHC-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.2473.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.