Gene detail

Detailed information of evm.model.Ap4.2574 in Astrangia poculata

Genomic Location: Ap4:22161696...22165315
NR annotation: CAH3123110.1, unnamed protein product, partial [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.2574

atgttgatctttgacaacatcaacatctacaaagggcattcccgtcacattagattaaagaagagtacggtaccagtcatgtggaacttcacagttagagcagctttaaaaccaaatataagtggcaaggaatacctttggagagaccctgacacagcaaccaaaccccaaggcaacttaaaagaagttaatagtgaacagttgtttattgagtcagcaccagaagttgagatggaatactcaagtgaggtagatgacttactactaaaggtattggactttggtctaaacacaatttcactaaagaaaaaagaattgctttgcatggctgaaaaggacttaatggatactctgaaaactgagacatttcaaaatacaaaggagaaaaattacacaatcagtattccagaagcaaagcaggaagaggacactccgtccttatcaaatgttatgattttgcctttctcactggcggatgaggcctttacctgtggcgaggcaattatataccgtgagtatgcaaaggaacttaacctagggattgagaagaatgctgactacataccctttgatgtttcaaaaaagaagtatgattttgcttctgccagagaacgatacaaggtatacagggaattagacattcactttcaacaattagaacaaatgaaaaagattctcgcagaccaagagaaagaatacagtgaaactgatccgggcattattaacccagacaatctaactacaagcaatttcaagactgttatgaaacaaaaatcacacaagatggctgagattatcaaagaattagtgacagggatcgaagggatgcccttaaaaaatgccattgcttttgttaaagcaaaaagtggcatatggtatggcttcaaggatgataatctctcgtctgttttgcatgtgtgtgttgaaagaaacctgaagacattggttgaatgtcttttagcatgtggtgcagaggttaattgtagagaaggatgtggaataactcccttacatttggctgtttttcatgggcatgttgaagtagtgaggactttacttcaatatgatgcaaaaccctcagggacattcccaggaaatttaccatcacctttacaagctgccctagaacaagaaaacccgcttgaaattgttaatcttctgcaaaataaatcaagagaaattcagtcacaaactgcatttcttgccgatgaacttctaaaagaaactgcaggtgtgaatgacagcacaaatacattgagccacaacactgaaactgacaactccaaccaaagcaatcacagtcacagcaacttggtgggcacaagagagagagttatagctgtgggagatgttaaaaccaccactactacacgtggcctcagaaataggtgccctgatgaatttggacggttcagtgagacccctggagacttccataccattggttattgcatggatgccatctcacgtctatatggatcagggggtttcttttatgttaccagacatgtcttgaacaggtcaaagataacaacagaagcatttgataaaatcttcaaagaagaacattatgaacgatgctttgagtcaattaatgattttttctggggtcttgccttggccattgtgaaatcatttgaagactctgtgtattttcctgatgcagacttgctaacccaatgggctgggagaagtagtggaaatttcagcaagctattgctaaacagatttcaagactgggcctctgaaaacagtacaaatgataagacatttcaattcttcgctgactttgtactagaatttggtcccctcttgctgatctaccaaagtgccattcgtaatggacagggaattgtgcgagaggcctgttggatgaaattgttaccaatttttgcgacactaaacaagaaaaattatagagacgaggcctttgttcatgtactcaatttcacttgcaactggtcagttgctcttaggaatatgttcaggacaaattgttcaatcaagcttaaacgatcacatcataatttagctcttgatgagtttgtggagacaatgctagtaagaccccttaaagtgtatgccagaaaacagacaacagtgtcaatcttacagaagattaacattaacttggagttgttacaacatgtacagaaagtgtttaaaaaatcatttgatattcaccacacaagcaaacatgcaaaacaagattccagtcctgacattgttaaggtggcttggtttgcaacctcacagggatggtttgaagataaaggaagggacaaagtttacagctacccttatggaaacaaagctctgccaaaccacaaagagccaattgcaaagaaacttttggatccagtttctagaggaaaagaaatgatcacaaaaaactttaatgaaatgagatgccgtcttttccccaacacagattacctgcctatgtag

Transcript

evm.model.Ap4.2574

ATGTTGATCTTTGACAACATCAACATCTACAAAGGGCATTCCCGTCACATTAGATTAAAGAAGAGTACGGTACCAGTCATGTGGAACTTCACAGTTAGAGCAGCTTTAAAACCAAATATAAGTGGCAAGGAATACCTTTGGAGAGACCCTGACACAGCAACCAAACCCCAAGGCAACTTAAAAGAAGTTAATAGTGAACAGTTGTTTATTGAGTCAGCACCAGAAGTTGAGATGGAATACTCAAGTGAGGTAGATGACTTACTACTAAAGGTATTGGACTTTGGTCTAAACACAATTTCACTAAAGAAAAAAGAATTGCTTTGCATGGCTGAAAAGGACTTAATGGATACTCTGAAAACTGAGACATTTCAAAATACAAAGGAGAAAAATTACACAATCAGTATTCCAGAAGCAAAGCAGGAAGAGGACACTCCGTCCTTATCAAATGTTATGATTTTGCCTTTCTCACTGGCGGATGAGGCCTTTACCTGTGGCGAGGCAATTATATACCGTGAGTATGCAAAGGAACTTAACCTAGGGATTGAGAAGAATGCTGACTACATACCCTTTGATGTTTCAAAAAAGAAGTATGATTTTGCTTCTGCCAGAGAACGATACAAGGTATACAGGGAATTAGACATTCACTTTCAACAATTAGAACAAATGAAAAAGATTCTCGCAGACCAAGAGAAAGAATACAGTGAAACTGATCCGGGCATTATTAACCCAGACAATCTAACTACAAGCAATTTCAAGACTGTTATGAAACAAAAATCACACAAGATGGCTGAGATTATCAAAGAATTAGTGACAGGGATCGAAGGGATGCCCTTAAAAAATGCCATTGCTTTTGTTAAAGCAAAAAGTGGCATATGGTATGGCTTCAAGGATGATAATCTCTCGTCTGTTTTGCATGTGTGTGTTGAAAGAAACCTGAAGACATTGGTTGAATGTCTTTTAGCATGTGGTGCAGAGGTTAATTGTAGAGAAGGATGTGGAATAACTCCCTTACATTTGGCTGTTTTTCATGGGCATGTTGAAGTAGTGAGGACTTTACTTCAATATGATGCAAAACCCTCAGGGACATTCCCAGGAAATTTACCATCACCTTTACAAGCTGCCCTAGAACAAGAAAACCCGCTTGAAATTGTTAATCTTCTGCAAAATAAATCAAGAGAAATTCAGTCACAAACTGCATTTCTTGCCGATGAACTTCTAAAAGAAACTGCAGGTGTGAATGACAGCACAAATACATTGAGCCACAACACTGAAACTGACAACTCCAACCAAAGCAATCACAGTCACAGCAACTTGGTGGGCACAAGAGAGAGAGTTATAGCTGTGGGAGATGTTAAAACCACCACTACTACACGTGGCCTCAGAAATAGGTGCCCTGATGAATTTGGACGGTTCAGTGAGACCCCTGGAGACTTCCATACCATTGGTTATTGCATGGATGCCATCTCACGTCTATATGGATCAGGGGGTTTCTTTTATGTTACCAGACATGTCTTGAACAGGTCAAAGATAACAACAGAAGCATTTGATAAAATCTTCAAAGAAGAACATTATGAACGATGCTTTGAGTCAATTAATGATTTTTTCTGGGGTCTTGCCTTGGCCATTGTGAAATCATTTGAAGACTCTGTGTATTTTCCTGATGCAGACTTGCTAACCCAATGGGCTGGGAGAAGTAGTGGAAATTTCAGCAAGCTATTGCTAAACAGATTTCAAGACTGGGCCTCTGAAAACAGTACAAATGATAAGACATTTCAATTCTTCGCTGACTTTGTACTAGAATTTGGTCCCCTCTTGCTGATCTACCAAAGTGCCATTCGTAATGGACAGGGAATTGTGCGAGAGGCCTGTTGGATGAAATTGTTACCAATTTTTGCGACACTAAACAAGAAAAATTATAGAGACGAGGCCTTTGTTCATGTACTCAATTTCACTTGCAACTGGTCAGTTGCTCTTAGGAATATGTTCAGGACAAATTGTTCAATCAAGCTTAAACGATCACATCATAATTTAGCTCTTGATGAGTTTGTGGAGACAATGCTAGTAAGACCCCTTAAAGTGTATGCCAGAAAACAGACAACAGTGTCAATCTTACAGAAGATTAACATTAACTTGGAGTTGTTACAACATGTACAGAAAGTGTTTAAAAAATCATTTGATATTCACCACACAAGCAAACATGCAAAACAAGATTCCAGTCCTGACATTGTTAAGGTGGCTTGGTTTGCAACCTCACAGGGATGGTTTGAAGATAAAGGAAGGGACAAAGTTTACAGCTACCCTTATGGAAACAAAGCTCTGCCAAACCACAAAGAGCCAATTGCAAAGAAACTTTTGGATCCAGTTTCTAGAGGAAAAGAAATGATCACAAAAAACTTTAATGAAATGAGATGCCGTCTTTTCCCCAACACAGATTACCTGCCTATGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000541 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20231 all species →	DUF6589	Family of unknown function (DUF6589)	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046496 all species →	Domain	Domain of unknown function DUF6589	Interproscan
IPR051637 all species →	Family	Ankyrin repeat domain-containing protein 49	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24180 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.2574.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.