Gene detail

Detailed information of evm.model.Ap4.262 in Astrangia poculata

Genomic Location: Ap4:2509121...2527184
NR annotation: KAJ7380755.1, 26S proteasome non-ATPase regulatory subunit 2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.262

atggcgccggttgccgaacagaagaaagagaaagaaacaactacagacaagaaagaagagacaaaatctaaagatgagaccaaaaaggaagaagaaccagaactgagcgaagaggacaggcaattgcaagaggagttgacaatgcttgtagaaagattgtcggagtctaatgtatcgttacacaagccagcactggaagccttgagatcacaaatcagagctagtacaagttcaatgacatcagttccaaaacctttgaaatacctcagacctcacttctcaacactgaaagagatttacgacaagtggggagagggtgaaaataagagattcttagcagacattatctcagttcttggcatgacaatcagtgacggacgcgagtgtctgaaattcagaatgctgggatccaaagaagacctagaatcatggggtcatgaatatgttagacacttggcagaagaaatccgtggtgagtacagtgacagatcagacaagggcgatggagtggaagacttggtgtcccttgccaaagaaattctcccatacaacatgcagcataatgcagaaactgaggcctgtgacttgctgatggagattgaacgccttgagttactggaacagtatgtcgacaaaaacagctttcaaagagtgtgtctttatcttacaagctgtgtgagttatgttcctgaaccagaagacagcacattgttgaaaactgcactgaacatttttagaaagtttgatcatcagccagaagccatgaagctggcgattcatttaaatgatgttgatctcataaaggacatatttgtttcttgcactggaagtgatgagaaaaaattaatacagaaacagatggctttcatgttggccagacaacaaatctatctggagctcgacgaaaacatggatgaatatgatgagctagtagagatcatgtccaacgcacatctcaacaacaacttcctaagtctagccagagagttggatatcatggagcctaaagttcctgaagatatttataaaacacatcttgagaacaaaggagtttctagtggtgttgctttggattctgcaagacaaaatttagcctcttcatttgtgaattcttttgtaaatgctgcgtttggtgctgataaactgttaacagaggatggtaacaagtggatttacaagaacaaggaacacggtatgatgagcacgacagcctcccttgggctcattttgttgtgggatgttgatgctggactcacgcagattgataaatatttatattccactgaagactacatcaaggctggcgccttgctggcttgtggtattgttaattctggagtgaggaatgaatgtgacccagcccttgctttgctgtctgattatgttctacacaacaacaatatcatgaggcttggctctgtagtggggcttggtcttgcttatgctggctccaacagacaagatgtgttgtctctaattcttcctgttctgggtgacccaaagtcaaacttagaggtgatcggaatggcaagcattgcctgtggtttggttgccataggaacatgtaacggtgaagtgacatcaaccatacttcaaacaatgatggaacgttctgagacggaagtcaaggaaacaaatgctcgtaacttagctttgggacttggtctgacattcttagggaaacaagaggcagcagaagctactctagaggctttgaaagttgttccagaacctcttggaaagtgggcttcgatcttagttgaaatctgtgcatatgctggaactggaaacgtccttaaaattcaggaaatgctgcacatctgcagtgaacattttgagcagaaagatgatgaagaaaaagataaagattccaaagacaaagattctaaggacaaagacaaggacaagaaagaagctgagaagtcagatgacggcagtcaccagggcgtggctgtactggggatcgctttaattgccatgggcgaggagattggtgctcagatggcactcagatcgtgcaatcatttgctgcagtatggtgaacctgtaatacgtcgtgcagtccctctggctctagctatcctatcagcctctaatcctcaactgagtattatcgacactctcagtaagctgtctcatgacaatgatgctgaggtttcacacaactccatctttgccatggggattgtcggagcaggcaccaacaatgcacggctaggtggaatgcttcgacaactggccatgtactaccacaaggatgcaaacaacttgtttatggtgcgacttgctcagggattagttcatcttggtaagggcacactaactcttggtccgtatcactgtgatcgctccctgatgatgcctgtagcagttggtggcctgttatctgttcttgtctcatttttggacgtaaagaatgtaattcttggtaaatcacactatgttctgtttaatctggtttctgccatgcaaccaagaatgttggtcacgttcgatacggacctgcgcccattacctgtctctgtgagagttggccaggcagttgatgtggtgggtcaagcaggaaagccaaagacaataacaggatttcagactcataccacaccagttttgcttgcatatggagaaagagcagagctagccacagaagaatatatttctcttgcaccaataatggagggttttgttatcttgaaaaagaacccagactatgagaagacagagagttga

Transcript

evm.model.Ap4.262

ATGGCGCCGGTTGCCGAACAGAAGAAAGAGAAAGAAACAACTACAGACAAGAAAGAAGAGACAAAATCTAAAGATGAGACCAAAAAGGAAGAAGAACCAGAACTGAGCGAAGAGGACAGGCAATTGCAAGAGGAGTTGACAATGCTTGTAGAAAGATTGTCGGAGTCTAATGTATCGTTACACAAGCCAGCACTGGAAGCCTTGAGATCACAAATCAGAGCTAGTACAAGTTCAATGACATCAGTTCCAAAACCTTTGAAATACCTCAGACCTCACTTCTCAACACTGAAAGAGATTTACGACAAGTGGGGAGAGGGTGAAAATAAGAGATTCTTAGCAGACATTATCTCAGTTCTTGGCATGACAATCAGTGACGGACGCGAGTGTCTGAAATTCAGAATGCTGGGATCCAAAGAAGACCTAGAATCATGGGGTCATGAATATGTTAGACACTTGGCAGAAGAAATCCGTGGTGAGTACAGTGACAGATCAGACAAGGGCGATGGAGTGGAAGACTTGGTGTCCCTTGCCAAAGAAATTCTCCCATACAACATGCAGCATAATGCAGAAACTGAGGCCTGTGACTTGCTGATGGAGATTGAACGCCTTGAGTTACTGGAACAGTATGTCGACAAAAACAGCTTTCAAAGAGTGTGTCTTTATCTTACAAGCTGTGTGAGTTATGTTCCTGAACCAGAAGACAGCACATTGTTGAAAACTGCACTGAACATTTTTAGAAAGTTTGATCATCAGCCAGAAGCCATGAAGCTGGCGATTCATTTAAATGATGTTGATCTCATAAAGGACATATTTGTTTCTTGCACTGGAAGTGATGAGAAAAAATTAATACAGAAACAGATGGCTTTCATGTTGGCCAGACAACAAATCTATCTGGAGCTCGACGAAAACATGGATGAATATGATGAGCTAGTAGAGATCATGTCCAACGCACATCTCAACAACAACTTCCTAAGTCTAGCCAGAGAGTTGGATATCATGGAGCCTAAAGTTCCTGAAGATATTTATAAAACACATCTTGAGAACAAAGGAGTTTCTAGTGGTGTTGCTTTGGATTCTGCAAGACAAAATTTAGCCTCTTCATTTGTGAATTCTTTTGTAAATGCTGCGTTTGGTGCTGATAAACTGTTAACAGAGGATGGTAACAAGTGGATTTACAAGAACAAGGAACACGGTATGATGAGCACGACAGCCTCCCTTGGGCTCATTTTGTTGTGGGATGTTGATGCTGGACTCACGCAGATTGATAAATATTTATATTCCACTGAAGACTACATCAAGGCTGGCGCCTTGCTGGCTTGTGGTATTGTTAATTCTGGAGTGAGGAATGAATGTGACCCAGCCCTTGCTTTGCTGTCTGATTATGTTCTACACAACAACAATATCATGAGGCTTGGCTCTGTAGTGGGGCTTGGTCTTGCTTATGCTGGCTCCAACAGACAAGATGTGTTGTCTCTAATTCTTCCTGTTCTGGGTGACCCAAAGTCAAACTTAGAGGTGATCGGAATGGCAAGCATTGCCTGTGGTTTGGTTGCCATAGGAACATGTAACGGTGAAGTGACATCAACCATACTTCAAACAATGATGGAACGTTCTGAGACGGAAGTCAAGGAAACAAATGCTCGTAACTTAGCTTTGGGACTTGGTCTGACATTCTTAGGGAAACAAGAGGCAGCAGAAGCTACTCTAGAGGCTTTGAAAGTTGTTCCAGAACCTCTTGGAAAGTGGGCTTCGATCTTAGTTGAAATCTGTGCATATGCTGGAACTGGAAACGTCCTTAAAATTCAGGAAATGCTGCACATCTGCAGTGAACATTTTGAGCAGAAAGATGATGAAGAAAAAGATAAAGATTCCAAAGACAAAGATTCTAAGGACAAAGACAAGGACAAGAAAGAAGCTGAGAAGTCAGATGACGGCAGTCACCAGGGCGTGGCTGTACTGGGGATCGCTTTAATTGCCATGGGCGAGGAGATTGGTGCTCAGATGGCACTCAGATCGTGCAATCATTTGCTGCAGTATGGTGAACCTGTAATACGTCGTGCAGTCCCTCTGGCTCTAGCTATCCTATCAGCCTCTAATCCTCAACTGAGTATTATCGACACTCTCAGTAAGCTGTCTCATGACAATGATGCTGAGGTTTCACACAACTCCATCTTTGCCATGGGGATTGTCGGAGCAGGCACCAACAATGCACGGCTAGGTGGAATGCTTCGACAACTGGCCATGTACTACCACAAGGATGCAAACAACTTGTTTATGGTGCGACTTGCTCAGGGATTAGTTCATCTTGGTAAGGGCACACTAACTCTTGGTCCGTATCACTGTGATCGCTCCCTGATGATGCCTGTAGCAGTTGGTGGCCTGTTATCTGTTCTTGTCTCATTTTTGGACGTAAAGAATGTAATTCTTGGTAAATCACACTATGTTCTGTTTAATCTGGTTTCTGCCATGCAACCAAGAATGTTGGTCACGTTCGATACGGACCTGCGCCCATTACCTGTCTCTGTGAGAGTTGGCCAGGCAGTTGATGTGGTGGGTCAAGCAGGAAAGCCAAAGACAATAACAGGATTTCAGACTCATACCACACCAGTTTTGCTTGCATATGGAGAAAGAGCAGAGCTAGCCACAGAAGAATATATTTCTCTTGCACCAATAATGGAGGGTTTTGTTATCTTGAAAAAGAACCCAGACTATGAGAAGACAGAGAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56701	26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus OX=9913 GN=PSMD2 PE=1 SV=2
Q5R9I6	26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii OX=9601 GN=PSMD2 PE=2 SV=1
Q13200	26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens OX=9606 GN=PSMD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005503 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17781 all species →	RPN1_RPN2_N	RPN1 N-terminal domain	Domain	Interproscan
PF18051 all species →	RPN1_C	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal	Domain	Interproscan
PF01851 all species →	PC_rep	Proteasome/cyclosome repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040892 all species →	Domain	RPN1, N-terminal	Interproscan
IPR041433 all species →	Domain	26S proteasome non-ATPase regulatory subunit RPN1, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016643 all species →	Family	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	Interproscan
IPR002015 all species →	Repeat	Proteasome/cyclosome repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10943 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000502 all species →	Cellular Component	proteasome complex	Interproscan
GO:0030234 all species →	Molecular Function	enzyme regulator activity	Interproscan
GO:0042176 all species →	Biological Process	regulation of protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008540 all species →	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0034515 all species →	Cellular Component	proteasome storage granule	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03028	PSMD2, RPN1; 26S proteasome regulatory subunit N1	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.