Gene detail

Detailed information of evm.model.Ap4.268 in Astrangia poculata

Genomic Location: Ap4:2543314...2588053
NR annotation: CAH3168716.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.268

atggcgtccatcctggatcagtacatgcaggcttctgcgggcgaaaacttgaatccttttctaggaccagacgttaatgaaccgatctcaacaggatacattgatgttagaagcgaggatgaagttcccatatttcggcggcaaaaggtcaactttagacctccaagcacaattgttgatgttgtggtctgcaataatatggtggccatagctctgagcaacaatgttttaatgagactagacttgtcaaatcccagtgaaatagatcgtgttgacatcaccaaacgagtggacgattccatccatcgaatcttcatggacccaacagccagacatctcatagtgtgcatgaaatcacaagaatccttttatttagcaaggaattccaagaaacccaaaccgttggcaaagatgaagggacaccttataaatgctattgcatggaataaatcgaaactgacagagagttcaacacagacaattctcctgggaacaaccaaaggcctgatatttgaaacagaagtggaaccagaagagaagttttttcaaggtggtctggaaaaattttggaaacagctgtacagtgtaaactctagtggtgacccagaagagtcaatctatggaatcatgtttgagaagttccctgcaactccaaaatctgataggaaatacttcatcatggtctcaacactgagtcgcatgtatcagtttattggtgatgcatcaggcacagattcactggattttcagccattgtttgctgattttgaaaataatccagcacctttccttcagatgccaggacctttggattctagtgagttagcgttattttaccctaaagtcagaggactaccaagatcttttgcatggcttacaggaagtggtgtttactttggccaactggatttcaatcttcaagagtcttgtgataacatcacatcagaaaccaaattattacaatacaagctggctgcagaaggaaaggagacagtccctcctctgtctgttggcctgactggtttccattctcttatgctgtataagaacaaatttgaagcagtgtcacttctgagtgaacaagttgtgtttgaagatctactcccacctcggtatggtgcaatgaggggtctatgcattgatattgtaaagaaaactgtgtggatattctctgattctgctattttccagtaccatgttacaagagaaagcagggatgtttggagaatgtaccttgaaagaggagaatttgaattagccaaagagtattgtaaggacaatcctgcaaatttggacaaagtcttaactaagcaagctgaggagctttttgagaacaaaagttataccaatgctgccaagtgctatgctcaagctcaagtgtcatttgaagaagttgctttaaagtttattcaagtggaagaaagacaagccctaagaatgttcctattaaaaaagctagatagtcttaaaaatcaggacaagacacaaatgacgatgctgattatgtggttgattgagctgtatttgaatgacctgggcagtttaaaagaaaatgatgcaaaagcaaaacatgaagacttggaggaggagtttaggaaattcttggcacaaacaaaagtcaagacatgtctggatcagaacaggaaaactgcttatgacttgatcgccagccatggagatgtggaaaatttaatattctttgctatgttgatgcaagattttgagcatgtaatcagccaccacattcaacatgacgacttcatggccgcactggatgtcctcattaaacagacagacacagagttgtattacaaattctctccagtgctgatgcagcacattccacgacaaaccgtaagtgcgtggattgaacagaagaagaagttggacccacgtcggctgattcctgctctggtgcactaccatcagcaaggaaaatcaacacagactggggaagccattcgctacctggagttttgcattgagaggttaggaaacagagatcaagctattcacaattatctactgtccttgtatattgagcaagaggatgatcggtcattactgcgatacctgcaaatgcaaggacaggacccagaagaagtgtgctatgacatgaagtacgccctcagactctgctcagagcacgacaagcagcgtgcctgtgtgcacatctacagtacaatgggactctttgaggaagccgttgatttgtctttaaaggttgatgtcgatctggcaaaaattcaagctcagaagcctccagaagatgatgaggtgttgaggaagaagctgtggttaagaattgctagacacgtggtggaggaggaacgagatgtcaaaaaggcaatggagtttttgaaccaatgtgaacttctcaagattgaagatattcttccttttttccaggattttgtcacaattgatcattttaaggatgctatttgttcatcacttcatgaatacaatcaacacattgaagaactcaaaaacgaaatgcaggaagccacagaaagtgcgaagacaataagatcagacattcatgaaatgagaaataaatacagtatagttccagcgcaggaaaagtgttcaatctgttcatatcctcttctcacaagaggcttctatgtgtttccctgtcatcatgccttccactcagattgtctgaaaaatgagatattaccaaatttgaaagaaaaacagagagctaaagttcaggaactttataatcagctgtacacatcatcaagaggggattcttccactgtcacactagcttcacgagagtctattaagaatgagttggatgacctaattgcatctgaatgtctctattgtggggaaattatgattcgaaccattgaccaaccattcatcttgccagatgaatatgacagtgttatagaaagctggcagtga

Transcript

evm.model.Ap4.268

GCCAAGATGGCGTCCATCCTGGATCAGTACATGCAGGCTTCTGCGGGCGAAAACTTGAATCCTTTTCTAGGACCAGACGTTAATGAACCGATCTCAACAGGATACATTGATGTTAGAAGCGAGGATGAAGTTCCCATATTTCGGCGGCAAAAGGTCAACTTTAGACCTCCAAGCACAATTGTTGATGTTGTGGTCTGCAATAATATGGTGGCCATAGCTCTGAGCAACAATGTTTTAATGAGACTAGACTTGTCAAATCCCAGTGAAATAGATCGTGTTGACATCACCAAACGAGTGGACGATTCCATCCATCGAATCTTCATGGACCCAACAGCCAGACATCTCATAGTGTGCATGAAATCACAAGAATCCTTTTATTTAGCAAGGAATTCCAAGAAACCCAAACCGTTGGCAAAGATGAAGGGACACCTTATAAATGCTATTGCATGGAATAAATCGAAACTGACAGAGAGTTCAACACAGACAATTCTCCTGGGAACAACCAAAGGCCTGATATTTGAAACAGAAGTGGAACCAGAAGAGAAGTTTTTTCAAGGTGGTCTGGAAAAATTTTGGAAACAGCTGTACAGTGTAAACTCTAGTGGTGACCCAGAAGAGTCAATCTATGGAATCATGTTTGAGAAGTTCCCTGCAACTCCAAAATCTGATAGGAAATACTTCATCATGGTCTCAACACTGAGTCGCATGTATCAGTTTATTGGTGATGCATCAGGCACAGATTCACTGGATTTTCAGCCATTGTTTGCTGATTTTGAAAATAATCCAGCACCTTTCCTTCAGATGCCAGGACCTTTGGATTCTAGTGAGTTAGCGTTATTTTACCCTAAAGTCAGAGGACTACCAAGATCTTTTGCATGGCTTACAGGAAGTGGTGTTTACTTTGGCCAACTGGATTTCAATCTTCAAGAGTCTTGTGATAACATCACATCAGAAACCAAATTATTACAATACAAGCTGGCTGCAGAAGGAAAGGAGACAGTCCCTCCTCTGTCTGTTGGCCTGACTGGTTTCCATTCTCTTATGCTGTATAAGAACAAATTTGAAGCAGTGTCACTTCTGAGTGAACAAGTTGTGTTTGAAGATCTACTCCCACCTCGGTATGGTGCAATGAGGGGTCTATGCATTGATATTGTAAAGAAAACTGTGTGGATATTCTCTGATTCTGCTATTTTCCAGTACCATGTTACAAGAGAAAGCAGGGATGTTTGGAGAATGTACCTTGAAAGAGGAGAATTTGAATTAGCCAAAGAGTATTGTAAGGACAATCCTGCAAATTTGGACAAAGTCTTAACTAAGCAAGCTGAGGAGCTTTTTGAGAACAAAAGTTATACCAATGCTGCCAAGTGCTATGCTCAAGCTCAAGTGTCATTTGAAGAAGTTGCTTTAAAGTTTATTCAAGTGGAAGAAAGACAAGCCCTAAGAATGTTCCTATTAAAAAAGCTAGATAGTCTTAAAAATCAGGACAAGACACAAATGACGATGCTGATTATGTGGTTGATTGAGCTGTATTTGAATGACCTGGGCAGTTTAAAAGAAAATGATGCAAAAGCAAAACATGAAGACTTGGAGGAGGAGTTTAGGAAATTCTTGGCACAAACAAAAGTCAAGACATGTCTGGATCAGAACAGGAAAACTGCTTATGACTTGATCGCCAGCCATGGAGATGTGGAAAATTTAATATTCTTTGCTATGTTGATGCAAGATTTTGAGCATGTAATCAGCCACCACATTCAACATGACGACTTCATGGCCGCACTGGATGTCCTCATTAAACAGACAGACACAGAGTTGTATTACAAATTCTCTCCAGTGCTGATGCAGCACATTCCACGACAAACCGTAAGTGCGTGGATTGAACAGAAGAAGAAGTTGGACCCACGTCGGCTGATTCCTGCTCTGGTGCACTACCATCAGCAAGGAAAATCAACACAGACTGGGGAAGCCATTCGCTACCTGGAGTTTTGCATTGAGAGGTTAGGAAACAGAGATCAAGCTATTCACAATTATCTACTGTCCTTGTATATTGAGCAAGAGGATGATCGGTCATTACTGCGATACCTGCAAATGCAAGGACAGGACCCAGAAGAAGTGTGCTATGACATGAAGTACGCCCTCAGACTCTGCTCAGAGCACGACAAGCAGCGTGCCTGTGTGCACATCTACAGTACAATGGGACTCTTTGAGGAAGCCGTTGATTTGTCTTTAAAGGTTGATGTCGATCTGGCAAAAATTCAAGCTCAGAAGCCTCCAGAAGATGATGAGGTGTTGAGGAAGAAGCTGTGGTTAAGAATTGCTAGACACGTGGTGGAGGAGGAACGAGATGTCAAAAAGGCAATGGAGTTTTTGAACCAATGTGAACTTCTCAAGATTGAAGATATTCTTCCTTTTTTCCAGGATTTTGTCACAATTGATCATTTTAAGGATGCTATTTGTTCATCACTTCATGAATACAATCAACACATTGAAGAACTCAAAAACGAAATGCAGGAAGCCACAGAAAGTGCGAAGACAATAAGATCAGACATTCATGAAATGAGAAATAAATACAGTATAGTTCCAGCGCAGGAAAAGTGTTCAATCTGTTCATATCCTCTTCTCACAAGAGGCTTCTATGTGTTTCCCTGTCATCATGCCTTCCACTCAGATTGTCTGAAAAATGAGATATTACCAAATTTGAAAGAAAAACAGAGAGCTAAAGTTCAGGAACTTTATAATCAGCTGTACACATCATCAAGAGGGGATTCTTCCACTGTCACACTAGCTTCACGAGAGTCTATTAAGAATGAGTTGGATGACCTAATTGCATCTGAATGTCTCTATTGTGGGGAAATTATGATTCGAACCATTGACCAACCATTCATCTTGCCAGATGAATATGACAGTGTTATAGAAAGCTGGCAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59015	Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio OX=7955 GN=vps18 PE=2 SV=2
Q9P253	Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=VPS18 PE=1 SV=2
Q8R307	Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Vps18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003470 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan
PF05131 all species →	Pep3_Vps18	Pep3/Vps18/deep orange beta-propeller domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR007810 all species →	Domain	Pep3/Vps18/deep orange, beta-propeller domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0007040 all species →	Biological Process	lysosome organization	Interproscan
GO:0008333 all species →	Biological Process	endosome to lysosome transport	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20181	VPS18, PEP3; vacuolar protein sorting-associated protein 18	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.