Gene detail

Detailed information of evm.model.Ap4.3065 in Astrangia poculata

Genomic Location: Ap4:24709497...24716015
NR annotation: XP_044165546.1, uncharacterized protein LOC122949522 [Acropora millepora]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.3065

atggagttgttgaaggaacgccagaagttaattttgttggcagacaaatcgccttacggttggaaaactgtggttgagtacaagcatcatgatcttgcggacgatgaagaggacgagaaaaagatctacagggcagagtctagagcagctagatctaccaagcggttcgcttctcgctcagctcagcaaagaagatttgtaacgcctgtcaccgctgcgacaccgcaactttccgcctcacagttgcctaatttattttcgcgtgtgcgtcctcagagtttgtcccagagatctagctctggtggaagactccgtagagctttaaatttctggaaggacatccgcgcacctaaatttattctggacgtgattgagtttggttacaagctaccacttttacaaattccgacgccctttgtggctaagaagaattcttcggctttggatgaatcaccttttgttgaatccgctattaatgagcttatttcgcaaggatgcttaagatattttgagtttactgttttaccgttcggtctcagttctgctccttttctgtttaccaagttgcttaagcctttagtcaagaaatggaggtcagagtcgaaagcaattattgtgtttttggatgatggcctcggggctgcagctgacgagagcaaagcaaaaattgcaagtttacaagttcatgctgatttgtttaaatctggctttctccctaacgaagctaaatgtgtttgggagccaacgcagattattatgtggctcgggaccgttttaaacacggcaacttctgaaatttctgctactgagaagcgtgttacttctttacaacaagatttgtcgtctcttttggctacttcttcaacttgtcttccagttcgtaagcttgctagtgtttgcgggaagattatttctcttggcaactgcgtcggcaatgtctccagacttatgtccaggaatctgtttgctgtcatcaactctgagccgtcttggaatgcttccatataccgctcttcagacgccttggctgagctcaatttctggtcatccaatgtggcaagcttaaatgggattcctatgtggcctgttagcagtaaaccttccaggattgtctattcggatgcctctggctctgcttgtgctagttttattgacttcgagggcaagatcttccatcaaaactggtcggatttcgagaaagctcagagttctacgtacagagagttgttagctgtttctttgtccttgaaggcatttaacaaatctttgaaagcacagacagtcacctggtttactgacaaccagaacgtcgttcggattgttaactctggttccaaagttcatttgttgcaggatcttgccatggatatttatcaaagttgtttgcttaatgccattaacattgatgttcaatggatcccaagagaccttaatagtgcggctgatgatgtcagtaaatttatcgactacgatgattacactatcaatgatgaagtcttccatgcccttgacgagttatggggcccacattcctgcaatagaggaaaacccaagaactctatttttggcagtaggccaatgccttttgtttcattagctctgcgtattaactttggcatcgtccccagactagattctgatttttcacgcgagtcgtttcgtgtccctgatatcttcgtttccggtttctggtcttcagagacccagaacactgccagtgtgtccctattgaaagagaaccttaaatcaacagtgttagcttctaaagcagcaggcacatccgaagtctacctcagggctttcaacaaatggagagcttttgccagagaagtcttggactccaaggactttcccattagaccgatcgactgtgccctttatttgcagcaccttcttgagtcgtccaagtctgcctccgccattaactgtgcgttctatgcttttagatgggctcaccaccttgccggagtcgattcacctactacacaccccactgttatcgctgttaaagaaggagctcttcgccttgctagccagccttcaaccaacaggaagcaacccctggatgtgagccacctaaagcttcttgctgcagattctaacttagaagatcttttgcaattgagaaatttagttatgttcattcttgcattttctggttttcttagaagttttgagttatgcgttattcgtagcaaggatgttctctttagtgagggtttcatgaccattaatattgagaaaagcaagactgaccaactaagagagaggagatctgttgttatcgcagaaacgcgtacggatacatgtccttgcaccttgctcaaattgtatatgcagaaagctcttattgctgataattcagacgaatatttgtttagacctatttcctcttctggtaatcggacgtgtcatgtaaaaatgacctggtatactcaggactttgttgatgctctattgttcaatgacactggagaagagattgcaaccccaaaggaggcaatcaagggaacatcagagtaa

Transcript

evm.model.Ap4.3065

ATGGAGTTGTTGAAGGAACGCCAGAAGTTAATTTTGTTGGCAGACAAATCGCCTTACGGTTGGAAAACTGTGGTTGAGTACAAGCATCATGATCTTGCGGACGATGAAGAGGACGAGAAAAAGATCTACAGGGCAGAGTCTAGAGCAGCTAGATCTACCAAGCGGTTCGCTTCTCGCTCAGCTCAGCAAAGAAGATTTGTAACGCCTGTCACCGCTGCGACACCGCAACTTTCCGCCTCACAGTTGCCTAATTTATTTTCGCGTGTGCGTCCTCAGAGTTTGTCCCAGAGATCTAGCTCTGGTGGAAGACTCCGTAGAGCTTTAAATTTCTGGAAGGACATCCGCGCACCTAAATTTATTCTGGACGTGATTGAGTTTGGTTACAAGCTACCACTTTTACAAATTCCGACGCCCTTTGTGGCTAAGAAGAATTCTTCGGCTTTGGATGAATCACCTTTTGTTGAATCCGCTATTAATGAGCTTATTTCGCAAGGATGCTTAAGATATTTTGAGTTTACTGTTTTACCGTTCGGTCTCAGTTCTGCTCCTTTTCTGTTTACCAAGTTGCTTAAGCCTTTAGTCAAGAAATGGAGGTCAGAGTCGAAAGCAATTATTGTGTTTTTGGATGATGGCCTCGGGGCTGCAGCTGACGAGAGCAAAGCAAAAATTGCAAGTTTACAAGTTCATGCTGATTTGTTTAAATCTGGCTTTCTCCCTAACGAAGCTAAATGTGTTTGGGAGCCAACGCAGATTATTATGTGGCTCGGGACCGTTTTAAACACGGCAACTTCTGAAATTTCTGCTACTGAGAAGCGTGTTACTTCTTTACAACAAGATTTGTCGTCTCTTTTGGCTACTTCTTCAACTTGTCTTCCAGTTCGTAAGCTTGCTAGTGTTTGCGGGAAGATTATTTCTCTTGGCAACTGCGTCGGCAATGTCTCCAGACTTATGTCCAGGAATCTGTTTGCTGTCATCAACTCTGAGCCGTCTTGGAATGCTTCCATATACCGCTCTTCAGACGCCTTGGCTGAGCTCAATTTCTGGTCATCCAATGTGGCAAGCTTAAATGGGATTCCTATGTGGCCTGTTAGCAGTAAACCTTCCAGGATTGTCTATTCGGATGCCTCTGGCTCTGCTTGTGCTAGTTTTATTGACTTCGAGGGCAAGATCTTCCATCAAAACTGGTCGGATTTCGAGAAAGCTCAGAGTTCTACGTACAGAGAGTTGTTAGCTGTTTCTTTGTCCTTGAAGGCATTTAACAAATCTTTGAAAGCACAGACAGTCACCTGGTTTACTGACAACCAGAACGTCGTTCGGATTGTTAACTCTGGTTCCAAAGTTCATTTGTTGCAGGATCTTGCCATGGATATTTATCAAAGTTGTTTGCTTAATGCCATTAACATTGATGTTCAATGGATCCCAAGAGACCTTAATAGTGCGGCTGATGATGTCAGTAAATTTATCGACTACGATGATTACACTATCAATGATGAAGTCTTCCATGCCCTTGACGAGTTATGGGGCCCACATTCCTGCAATAGAGGAAAACCCAAGAACTCTATTTTTGGCAGTAGGCCAATGCCTTTTGTTTCATTAGCTCTGCGTATTAACTTTGGCATCGTCCCCAGACTAGATTCTGATTTTTCACGCGAGTCGTTTCGTGTCCCTGATATCTTCGTTTCCGGTTTCTGGTCTTCAGAGACCCAGAACACTGCCAGTGTGTCCCTATTGAAAGAGAACCTTAAATCAACAGTGTTAGCTTCTAAAGCAGCAGGCACATCCGAAGTCTACCTCAGGGCTTTCAACAAATGGAGAGCTTTTGCCAGAGAAGTCTTGGACTCCAAGGACTTTCCCATTAGACCGATCGACTGTGCCCTTTATTTGCAGCACCTTCTTGAGTCGTCCAAGTCTGCCTCCGCCATTAACTGTGCGTTCTATGCTTTTAGATGGGCTCACCACCTTGCCGGAGTCGATTCACCTACTACACACCCCACTGTTATCGCTGTTAAAGAAGGAGCTCTTCGCCTTGCTAGCCAGCCTTCAACCAACAGGAAGCAACCCCTGGATGTGAGCCACCTAAAGCTTCTTGCTGCAGATTCTAACTTAGAAGATCTTTTGCAATTGAGAAATTTAGTTATGTTCATTCTTGCATTTTCTGGTTTTCTTAGAAGTTTTGAGTTATGCGTTATTCGTAGCAAGGATGTTCTCTTTAGTGAGGGTTTCATGACCATTAATATTGAGAAAAGCAAGACTGACCAACTAAGAGAGAGGAGATCTGTTGTTATCGCAGAAACGCGTACGGATACATGTCCTTGCACCTTGCTCAAATTGTATATGCAGAAAGCTCTTATTGCTGATAATTCAGACGAATATTTGTTTAGACCTATTTCCTCTTCTGGTAATCGGACGTGTCATGTAAAAATGACCTGGTATACTCAGGACTTTGTTGATGCTCTATTGTTCAATGACACTGGAGAAGAGATTGCAACCCCAAAGGAGGCAATCAAGGGAACATCAGAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.3065.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.