Genomic Location: Ap4:3232762...3247513
NR annotation: CAH3118348.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.328 |
| Transcript |
| evm.model.Ap4.328 |
| Protein |
| evm.model.Ap4.328 |
| UniProt accession | Description |
|---|---|
| Q9C0H5 | Rho GTPase-activating protein 39 OS=Homo sapiens OX=9606 GN=ARHGAP39 PE=1 SV=2 |
| P59281 | Rho GTPase-activating protein 39 OS=Mus musculus OX=10090 GN=Arhgap39 PE=1 SV=2 |
| P18890 | Rho GTPase-activating protein 39 (Fragment) OS=Rattus norvegicus OX=10116 GN=Arhgap39 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003516 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00784 all species → | MyTH4 | MyTH4 domain | Family | Interproscan |
| PF00620 all species → | RhoGAP | RhoGAP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036020 all species → | Homologous_superfamily | WW domain superfamily | Interproscan |
| IPR000198 all species → | Domain | Rho GTPase-activating protein domain | Interproscan |
| IPR000857 all species → | Domain | MyTH4 domain | Interproscan |
| IPR038185 all species → | Homologous_superfamily | MyTH4 domain superfamily | Interproscan |
| IPR008936 all species → | Homologous_superfamily | Rho GTPase activation protein | Interproscan |
| IPR001202 all species → | Domain | WW domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45876 all species → | FI04035P | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0005856 all species → | Cellular Component | cytoskeleton | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20649 | ARHGAP39; Rho GTPase-activating protein 39 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap4.328 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
