Gene detail

Detailed information of evm.model.Ap4.3530 in Astrangia poculata

Genomic Location: Ap4:27019431...27022772
NR annotation: KAJ7371367.1, hypothetical protein OS493_025829 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.3530

atgaagtctgtaaggagagtttttaagaagaaattaacgccgtataatctccgaagcagagggccagctccccacgtcatacgttcaagtacacctaaagtcaatagtgaagttcaggtctctttgtccgacgaagagaattgcgatcagccccgacgctcaacagcgtattccagtccagatcaagcaaatattactaatagagaaaccatagacataagtatcgcttcaagtcacgactcgcctattttacaaccaagtttatcaaaacaacaaactcccagaggaccgcaagaagcgagcgaaggcagttcgctcgaagatttttcgccgcttaactccaggcgatttccgaccggttcccgctttactttaaacgttgaacactcaagtcaagaagacatcgagcctcagcgggacttgagcgccgcccaaatccctcaatcaccggctgatattttaggtcgtgtagaaagtagaatacatttggaaaactcaaaacaaaatttaaaacaaaacaaaaaaaagacacgcttcgaatcgagttcaagcgacgactttgaagactctttctcgacctgtagcagagaggatagcgacgatgaagagtacaaacacagcaaacccgatagacagacacacataggctctgttagcgctcgccacaaaatggatcccgaagaagtttctgagttccagagacaagtcatagatattcagcgtcaaatgtgcaagcaattaaaggacacacaaacagcaatggaaagcgtagctgctcccgaaccaaccttggctaaacaagcgttgttccatggatatgagaatgaaaatgtggaccgctggttacaacggtttaccctgtatttggccaacaggaagattaggactgatagtcatcaagccgcaattcaactcgcgttacatctttccggaccagccgagtccttttactacaacttggccagcccagtacaaagctccttcgacgaattaagaagtgccctgaaggagagattttcacccgcacatcgctcgctccggttacgtcaagcactttcaataagacggcaaggatctagcgaatccattgagaaattcttggccgatctgaacgagaaattcagttgcttagatctacgcgatgaggataagttaagttacctgattcaaggtcttcgcccggacatacaagctgaagttttgaaaaaggagccgaaaacttacacagaagctgaggacacggcccgattaatttactccattcagcagtccttgttccagagacgcgaagaagacatctcgcgtatcgtattaaaggaaaagctttccggttccagtccatcagaaggctcgacttctcagccgtcagccgcaaatgacaacaaggtacttagtgccctagcggacctaactgcctcgatcagtaaattgactcattcaaacgcacctactgtcaagcactcctcaccaacagcgacgaacgttgttcccttggacgggccgtctgcagtcgccgtcttgaacgattcccttagaggaaatgttgttaattccagtggaacgagcagtgaatatcgacacctggaagagatgatccaaaaattaggccgtgaaatggacgccagaatagacgcccttaccgcagcagaaccatatggaaattacagagatagtaacatcgctcacatagccgcgttttctgaaaacaacaaaagtaagccatcggaggttactgaagatattcgccgtatggaaaaaagattcaccaataaattagaaaatctgtaccaacgagtcagacgagttgataaccgaataaacagtcttgcccacagtaaccaagtcactcactccgagctcgcagacaacagagaacgaaaccgacagcctagaccagtgtgttataagtgtggacgcgttggtcatattcagtacaactgttactattaccgaccagaagacccaaccttaaatcaagaagaggcacaagaataccgtacattttataatcaagaagaagctcatcagcagggacctcaagccccgcacgtttctgccttacccaagcgagacaagacaactggtaacaaccaagcatccgccgatattcagcagaaggaaggacgtgtttccccgacatacgaaagtaacgccaacctgaatctcagtgatctaaccgtagcaggtgaaatagcaggccaaccagttcagttcctcgtggatactggagcatgcgtgtcagccattgacgaacagttcttcacgaagatttatggtcaattcccgcctaaaatgactgatggttccttatcgtctgtccagacagttaatggagaggaaatgtccgtattgggaaagatttccgtgcctttacagctccatgatcgtgaatattcctgtaagtttcatgttatgcagaacctcacctatgatgcaatccttggtcgtgattttctacgaaacaatggtgcccaaattgatctggcggatagtaccctttccttcaaggcagcaaaacgtccaagaaaaccttccagtacaacttctgtgccagttatgggatcctttcttccttcatcgcgcccgaagacgtttacagtaaagaaaaccatcaccacgcatgttgatccagcacccttcgctaagattctcgtgtccaaattaattcaccgaagtgaaaagaacaaagacttggcttttcatcgatcactcttagttttgatgctcattctactgtacctcctcacagcttcgcacactcaggaaatcgacaatccagttattcagaaacagcgaaagttcttcgtgcccagaacccccgatgatatcgttggtgatacgcgcgaacgtcgtaccccagttaccgattcaaaagtgattaacaaggaatctgggcaacgtatggaatcaaaagaaaccaaagcagagagcataaaagtatcgaaaacagtagatgtccagaaaacgttaaagcccactttttcaagcccgttaacagtcaaccaggatttgcaagaagatgacaagagagatgcatttgatgctattagcagacaccctggaaatcaattaccgcattattga

Transcript

evm.model.Ap4.3530

ATGAAGTCTGTAAGGAGAGTTTTTAAGAAGAAATTAACGCCGTATAATCTCCGAAGCAGAGGGCCAGCTCCCCACGTCATACGTTCAAGTACACCTAAAGTCAATAGTGAAGTTCAGGTCTCTTTGTCCGACGAAGAGAATTGCGATCAGCCCCGACGCTCAACAGCGTATTCCAGTCCAGATCAAGCAAATATTACTAATAGAGAAACCATAGACATAAGTATCGCTTCAAGTCACGACTCGCCTATTTTACAACCAAGTTTATCAAAACAACAAACTCCCAGAGGACCGCAAGAAGCGAGCGAAGGCAGTTCGCTCGAAGATTTTTCGCCGCTTAACTCCAGGCGATTTCCGACCGGTTCCCGCTTTACTTTAAACGTTGAACACTCAAGTCAAGAAGACATCGAGCCTCAGCGGGACTTGAGCGCCGCCCAAATCCCTCAATCACCGGCTGATATTTTAGGTCGTGTAGAAAGTAGAATACATTTGGAAAACTCAAAACAAAATTTAAAACAAAACAAAAAAAAGACACGCTTCGAATCGAGTTCAAGCGACGACTTTGAAGACTCTTTCTCGACCTGTAGCAGAGAGGATAGCGACGATGAAGAGTACAAACACAGCAAACCCGATAGACAGACACACATAGGCTCTGTTAGCGCTCGCCACAAAATGGATCCCGAAGAAGTTTCTGAGTTCCAGAGACAAGTCATAGATATTCAGCGTCAAATGTGCAAGCAATTAAAGGACACACAAACAGCAATGGAAAGCGTAGCTGCTCCCGAACCAACCTTGGCTAAACAAGCGTTGTTCCATGGATATGAGAATGAAAATGTGGACCGCTGGTTACAACGGTTTACCCTGTATTTGGCCAACAGGAAGATTAGGACTGATAGTCATCAAGCCGCAATTCAACTCGCGTTACATCTTTCCGGACCAGCCGAGTCCTTTTACTACAACTTGGCCAGCCCAGTACAAAGCTCCTTCGACGAATTAAGAAGTGCCCTGAAGGAGAGATTTTCACCCGCACATCGCTCGCTCCGGTTACGTCAAGCACTTTCAATAAGACGGCAAGGATCTAGCGAATCCATTGAGAAATTCTTGGCCGATCTGAACGAGAAATTCAGTTGCTTAGATCTACGCGATGAGGATAAGTTAAGTTACCTGATTCAAGGTCTTCGCCCGGACATACAAGCTGAAGTTTTGAAAAAGGAGCCGAAAACTTACACAGAAGCTGAGGACACGGCCCGATTAATTTACTCCATTCAGCAGTCCTTGTTCCAGAGACGCGAAGAAGACATCTCGCGTATCGTATTAAAGGAAAAGCTTTCCGGTTCCAGTCCATCAGAAGGCTCGACTTCTCAGCCGTCAGCCGCAAATGACAACAAGGTACTTAGTGCCCTAGCGGACCTAACTGCCTCGATCAGTAAATTGACTCATTCAAACGCACCTACTGTCAAGCACTCCTCACCAACAGCGACGAACGTTGTTCCCTTGGACGGGCCGTCTGCAGTCGCCGTCTTGAACGATTCCCTTAGAGGAAATGTTGTTAATTCCAGTGGAACGAGCAGTGAATATCGACACCTGGAAGAGATGATCCAAAAATTAGGCCGTGAAATGGACGCCAGAATAGACGCCCTTACCGCAGCAGAACCATATGGAAATTACAGAGATAGTAACATCGCTCACATAGCCGCGTTTTCTGAAAACAACAAAAGTAAGCCATCGGAGGTTACTGAAGATATTCGCCGTATGGAAAAAAGATTCACCAATAAATTAGAAAATCTGTACCAACGAGTCAGACGAGTTGATAACCGAATAAACAGTCTTGCCCACAGTAACCAAGTCACTCACTCCGAGCTCGCAGACAACAGAGAACGAAACCGACAGCCTAGACCAGTGTGTTATAAGTGTGGACGCGTTGGTCATATTCAGTACAACTGTTACTATTACCGACCAGAAGACCCAACCTTAAATCAAGAAGAGGCACAAGAATACCGTACATTTTATAATCAAGAAGAAGCTCATCAGCAGGGACCTCAAGCCCCGCACGTTTCTGCCTTACCCAAGCGAGACAAGACAACTGGTAACAACCAAGCATCCGCCGATATTCAGCAGAAGGAAGGACGTGTTTCCCCGACATACGAAAGTAACGCCAACCTGAATCTCAGTGATCTAACCGTAGCAGGTGAAATAGCAGGCCAACCAGTTCAGTTCCTCGTGGATACTGGAGCATGCGTGTCAGCCATTGACGAACAGTTCTTCACGAAGATTTATGGTCAATTCCCGCCTAAAATGACTGATGGTTCCTTATCGTCTGTCCAGACAGTTAATGGAGAGGAAATGTCCGTATTGGGAAAGATTTCCGTGCCTTTACAGCTCCATGATCGTGAATATTCCTGTAAGTTTCATGTTATGCAGAACCTCACCTATGATGCAATCCTTGGTCGTGATTTTCTACGAAACAATGGTGCCCAAATTGATCTGGCGGATAGTACCCTTTCCTTCAAGGCAGCAAAACGTCCAAGAAAACCTTCCAGTACAACTTCTGTGCCAGTTATGGGATCCTTTCTTCCTTCATCGCGCCCGAAGACGTTTACAGTAAAGAAAACCATCACCACGCATGTTGATCCAGCACCCTTCGCTAAGATTCTCGTGTCCAAATTAATTCACCGAAGTGAAAAGAACAAAGACTTGGCTTTTCATCGATCACTCTTAGTTTTGATGCTCATTCTACTGTACCTCCTCACAGCTTCGCACACTCAGGAAATCGACAATCCAGTTATTCAGAAACAGCGAAAGTTCTTCGTGCCCAGAACCCCCGATGATATCGTTGGTGATACGCGCGAACGTCGTACCCCAGTTACCGATTCAAAAGTGATTAACAAGGAATCTGGGCAACGTATGGAATCAAAAGAAACCAAAGCAGAGAGCATAAAAGTATCGAAAACAGTAGATGTCCAGAAAACGTTAAAGCCCACTTTTTCAAGCCCGTTAACAGTCAACCAGGATTTGCAAGAAGATGACAAGAGAGATGCATTTGATGCTATTAGCAGACACCCTGGAAATCAATTACCGCATTATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000748 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03732 all species →	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005162 all species →	Domain	Retrotransposon gag domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12917 all species →	ASPARTYL PROTEASE DDI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.3530.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.