Gene detail

Detailed information of evm.model.Ap4.383 in Astrangia poculata

Genomic Location: Ap4:3673602...3691090
NR annotation: XP_020612632.1, uncharacterized protein LOC110050998 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.383

atggaaggtagttttgcaagggctttatacacctacgaatccaataatcctgacgaactctctgttcctgagggaagcatcataagaataactcagtacataaacaaacattggttggaagctaattatcagggggagacaggattgtttcctgttacttatgccgagaggttaaaaaatgagacgcagatgcagaaggatgcctctaccgatgacgaattacaagacaacttaccatccaattggcagggacaaaacaacgaattttatagacacaatgatttttcagcaaaacatagtaatggcaatgagtcttttgtagaagctgcttttgggtttagtgctagaaatgacagtgagcttacatttccttctggggctctgatagaggttacaaaagatgtcgatgatgactggcttgaagggtcattcaatggcaagacaggactttttccaaagagttacctcaaatcgtctgaaaaaccatgtgcccgtgctgtatacccctttgttggggaaagcgtgggagaacttacattccgagaaggtgactgtatctttcttcgtaagcgtttgaactcacaatggatggaaggggaaattggtggcaaagtggggcttttcccttcaagctttgttgctgtcgaagttgagttacctcctgaacaaaatacatttgtaaatggagattttaattttatggatttgccatctaatgctggagtccaaaacaatactgtagcatcaaaaattaaatggaaaagaggtatgaaaggaagggctctgtttcattttacagcgttgtattcaggagacctggagttgaataaaggagatattgtcactgttcttgaagttgacgacgataactggattgagggtcagttagcaaatggaatatgtgggtcatgccctgcggcatatctggaacctgtatatgatacaagcagacaatatgacaataaatcactgaaggctaaaactcaaggatttgcatctgatgccagtttctctggaatttttgatgactttgtgtctgacactggctatataaacacgtcacaaaaaggtagctctcgtcaacagaccaatgattttgttgactcatacacaaagagagacgatgatgcatacaaataccttttagactcgtcgttcacgcaggatccaactcctgcccttcttccatccaacaagcccacaactgagactcaagaaactggacaaagaactaaacctttgttaaagccaaagccggcactaagaactaaaccgacgcaaaattattcagtgacatacttggggggcaaggatagtggagaactctctgcaccaaaatcttaccaaaccaatgttagtccttcaacatccatgccctcactacaaggtggtagtgcaccagtgcctagctctagagacacatcattaagtaaccattttcaaattccaaatcttcatcaagactctgctggaacttggcctggcaaaaaagcagggatccatagacatgttgcggatgaaaagagatacagaaagaacttttttgacgatgatgatctgttatcaggcaactgcacatcattgccgactccactggttccattacctcaaacagggatcgatgatagaaatagtgaatcaagtacgtcagaagattctccaagaacacccaaacgaccagcacccccacccccgaaacgagacagcagcagcaaaaatcatgtccgcagcagcactcttccagcaactagatcaaagggtcttgtacaaagtgaatttagtagggaggcatcatcatcaaaagcaaaggaccagcaactgctggatggaaaggacatgaaacagaatggacggccacataccccttctccaacagaaaataaaagggacttttccctttccatcaaaggatctcctaagatgagaagagctggtggaagtacaaagcctaaacctctttctaggccacattctgtgcattggaaagacagggattctcatgatacagcagagaagagtccactggagctgagacgttcaaacagtctagaaactttaagagaggttaaatccagcagtgttaccatggctactggcagtgcaaaacgcagcgatcaacaatctgtcaacaaaggaaattcagcagagggaactgatgtgccagggctggcagcactacaagaaaggattgcagaggcagaggagaacctcaagaaggaaatgaaagttcacactggattcaagactatttctcagcttgtgatgactgatcctgttaagcaaagagaaatggaagctaaggtgtcacagagccagcagaagataaatgaatggcaggaagaattaaaacatctcaaagatgaacaagtctttctgatagagtcacacaggaaaaaaacactgaagattaaaatagctgacttggaagcagacttagagaaacaagtgcgaagtcagagaagtcttgaaatgttgcttggtgttgtggaggagaacagaaagaaagaagttatggagaaccttggagtgtgtgcgcaacttgtggagaagatcaagcgagagctaactgagttagaggtttctctgcacagcttaactgaaaaaccagcagagtcaagccaaaaacacatggctgaacaaagacagcgagtcttgactgaactcataaatacagagaaagattactgcaacgaccttgagctctgtgtaaaacacttcctgcttgaacttcaagatgcacaggtgaaggatcttgactgtgaaggattgtttggtaacattgagagtgtgttggaaacatcacagaaactgttgaaaagcttagaagatgctgttcaagacaaggaaggaaaagatcaggaacttggaaagtgttttgtggacatagctgaagagatgaaagaagtgtatgcggtgtactgtaggaatcatgatgatgctatctcactcatggaaaagtatgaggaagtacctgagatacaagaagccttcacaaaatgtttggacaagattagagaacacacgcggtgttgggacttgtcgtcatttcttatcaaaccagttcagagagttctgaaatatccactcttgttaaatgaactacttaagtatacgcctgaaatccacggggacaagtacaatttactgaaagcaatatcggttatgactgatgtagcaaacgcaatcaatgagtttaaaagaagaaaagatcttgtcgtcaagtacaaaaaagtagaagacagtggtctaaccaataagatacagaagctaagctggcattcagtggtgaaaaaaggctccaggtttaaccagaggctaacacaactcacagggctcgtgtcacagactgttgacgaaaaatttattgaagaagagaagaagttccgtgcagtagagaaaactgtgaaaacgctctggaagaacatctccacttatttggaagaatttcaggagacaatggaatgtcacaagtcgtcagggcagaatgtcagtgatttctatcaagaagctgccacgtgttcagaggtgtccacttatcagagaatacagaaaaggatcggagaaactatcctttgtagatttatggacagtgttcaggtacaagttttgtctccgctcaattcgttactcaacttatttcaaggcccgcagcgtttgatccagaaacgaaacgacaagtgcttggactacgatcgctggtcaaacaagattgacaagataaaagacagggacaagttaaaagcggcaaaagaagaactcgaacttgccaagaagaactacgaagctctaaacacgcagctgcttgaagagattcctggttttactgagatgtgcatggctctgacggtggactgtctagaaaactttgccttagcacagaacggactatactgtgaaatacagcaagattatgacgagctgttacagttgccagtcgtgcaggcagatgacgaggacattgttgagcatcacagcaaaagatcagtacaagttatggaacagttttcagatctgagctttattccgtgtagttttgtggctaaagacagttcacgcaagaaacggcgatcattaaaaattccaagcacgccttcccacgacccagacgcagtagaagatgatagcgagaccaagaacggcttgttaaataccaaagaaggcgagctgggtggggagggtgggggagcaaagaaaggtccaccactcccttcccctgcgattcttcaaccacggccagcgccgcggagactaagtagtagaacaagcctggagctcaaggatgttgacagctcacaaccagtggaaataatcccaggggaaaacaaacgctacgttgtcgagttcaacttcgaagctcaaaatgcgggggagttgtctgtatccgagggggatcttgtctctgtcctgcgtcactcagatagcagtggtaacccggaatggtggctggttcactataacggagcttcggggtatatcccggagagttatctatccccggtgggtgacagtgacagtgacaatgatggcgaaaatgatgatggtgacgacaatactgcacaggacatagatggaactgatacaaacggtgttaaagatgatgatactacatccacgcaagctgaaactgctgttaagttatactactgtgctgaatttgcgttcgaggcgagcagcgcggctgagttgagtcttgatgaaggacagttagtaattgtgttacagaaacaagatttgaccgggaatgacgaatggtggctagtggaagtgaacggacaaaaaggatatgttccttcaagttatttgacagcagtggaggattaa

Transcript

evm.model.Ap4.383

ATGGAAGGTAGTTTTGCAAGGGCTTTATACACCTACGAATCCAATAATCCTGACGAACTCTCTGTTCCTGAGGGAAGCATCATAAGAATAACTCAGTACATAAACAAACATTGGTTGGAAGCTAATTATCAGGGGGAGACAGGATTGTTTCCTGTTACTTATGCCGAGAGGTTAAAAAATGAGACGCAGATGCAGAAGGATGCCTCTACCGATGACGAATTACAAGACAACTTACCATCCAATTGGCAGGGACAAAACAACGAATTTTATAGACACAATGATTTTTCAGCAAAACATAGTAATGGCAATGAGTCTTTTGTAGAAGCTGCTTTTGGGTTTAGTGCTAGAAATGACAGTGAGCTTACATTTCCTTCTGGGGCTCTGATAGAGGTTACAAAAGATGTCGATGATGACTGGCTTGAAGGGTCATTCAATGGCAAGACAGGACTTTTTCCAAAGAGTTACCTCAAATCGTCTGAAAAACCATGTGCCCGTGCTGTATACCCCTTTGTTGGGGAAAGCGTGGGAGAACTTACATTCCGAGAAGGTGACTGTATCTTTCTTCGTAAGCGTTTGAACTCACAATGGATGGAAGGGGAAATTGGTGGCAAAGTGGGGCTTTTCCCTTCAAGCTTTGTTGCTGTCGAAGTTGAGTTACCTCCTGAACAAAATACATTTGTAAATGGAGATTTTAATTTTATGGATTTGCCATCTAATGCTGGAGTCCAAAACAATACTGTAGCATCAAAAATTAAATGGAAAAGAGGTATGAAAGGAAGGGCTCTGTTTCATTTTACAGCGTTGTATTCAGGAGACCTGGAGTTGAATAAAGGAGATATTGTCACTGTTCTTGAAGTTGACGACGATAACTGGATTGAGGGTCAGTTAGCAAATGGAATATGTGGGTCATGCCCTGCGGCATATCTGGAACCTGTATATGATACAAGCAGACAATATGACAATAAATCACTGAAGGCTAAAACTCAAGGATTTGCATCTGATGCCAGTTTCTCTGGAATTTTTGATGACTTTGTGTCTGACACTGGCTATATAAACACGTCACAAAAAGGTAGCTCTCGTCAACAGACCAATGATTTTGTTGACTCATACACAAAGAGAGACGATGATGCATACAAATACCTTTTAGACTCGTCGTTCACGCAGGATCCAACTCCTGCCCTTCTTCCATCCAACAAGCCCACAACTGAGACTCAAGAAACTGGACAAAGAACTAAACCTTTGTTAAAGCCAAAGCCGGCACTAAGAACTAAACCGACGCAAAATTATTCAGTGACATACTTGGGGGGCAAGGATAGTGGAGAACTCTCTGCACCAAAATCTTACCAAACCAATGTTAGTCCTTCAACATCCATGCCCTCACTACAAGGTGGTAGTGCACCAGTGCCTAGCTCTAGAGACACATCATTAAGTAACCATTTTCAAATTCCAAATCTTCATCAAGACTCTGCTGGAACTTGGCCTGGCAAAAAAGCAGGGATCCATAGACATGTTGCGGATGAAAAGAGATACAGAAAGAACTTTTTTGACGATGATGATCTGTTATCAGGCAACTGCACATCATTGCCGACTCCACTGGTTCCATTACCTCAAACAGGGATCGATGATAGAAATAGTGAATCAAGTACGTCAGAAGATTCTCCAAGAACACCCAAACGACCAGCACCCCCACCCCCGAAACGAGACAGCAGCAGCAAAAATCATGTCCGCAGCAGCACTCTTCCAGCAACTAGATCAAAGGGTCTTGTACAAAGTGAATTTAGTAGGGAGGCATCATCATCAAAAGCAAAGGACCAGCAACTGCTGGATGGAAAGGACATGAAACAGAATGGACGGCCACATACCCCTTCTCCAACAGAAAATAAAAGGGACTTTTCCCTTTCCATCAAAGGATCTCCTAAGATGAGAAGAGCTGGTGGAAGTACAAAGCCTAAACCTCTTTCTAGGCCACATTCTGTGCATTGGAAAGACAGGGATTCTCATGATACAGCAGAGAAGAGTCCACTGGAGCTGAGACGTTCAAACAGTCTAGAAACTTTAAGAGAGGTTAAATCCAGCAGTGTTACCATGGCTACTGGCAGTGCAAAACGCAGCGATCAACAATCTGTCAACAAAGGAAATTCAGCAGAGGGAACTGATGTGCCAGGGCTGGCAGCACTACAAGAAAGGATTGCAGAGGCAGAGGAGAACCTCAAGAAGGAAATGAAAGTTCACACTGGATTCAAGACTATTTCTCAGCTTGTGATGACTGATCCTGTTAAGCAAAGAGAAATGGAAGCTAAGGTGTCACAGAGCCAGCAGAAGATAAATGAATGGCAGGAAGAATTAAAACATCTCAAAGATGAACAAGTCTTTCTGATAGAGTCACACAGGAAAAAAACACTGAAGATTAAAATAGCTGACTTGGAAGCAGACTTAGAGAAACAAGTGCGAAGTCAGAGAAGTCTTGAAATGTTGCTTGGTGTTGTGGAGGAGAACAGAAAGAAAGAAGTTATGGAGAACCTTGGAGTGTGTGCGCAACTTGTGGAGAAGATCAAGCGAGAGCTAACTGAGTTAGAGGTTTCTCTGCACAGCTTAACTGAAAAACCAGCAGAGTCAAGCCAAAAACACATGGCTGAACAAAGACAGCGAGTCTTGACTGAACTCATAAATACAGAGAAAGATTACTGCAACGACCTTGAGCTCTGTGTAAAACACTTCCTGCTTGAACTTCAAGATGCACAGGTGAAGGATCTTGACTGTGAAGGATTGTTTGGTAACATTGAGAGTGTGTTGGAAACATCACAGAAACTGTTGAAAAGCTTAGAAGATGCTGTTCAAGACAAGGAAGGAAAAGATCAGGAACTTGGAAAGTGTTTTGTGGACATAGCTGAAGAGATGAAAGAAGTGTATGCGGTGTACTGTAGGAATCATGATGATGCTATCTCACTCATGGAAAAGTATGAGGAAGTACCTGAGATACAAGAAGCCTTCACAAAATGTTTGGACAAGATTAGAGAACACACGCGGTGTTGGGACTTGTCGTCATTTCTTATCAAACCAGTTCAGAGAGTTCTGAAATATCCACTCTTGTTAAATGAACTACTTAAGTATACGCCTGAAATCCACGGGGACAAGTACAATTTACTGAAAGCAATATCGGTTATGACTGATGTAGCAAACGCAATCAATGAGTTTAAAAGAAGAAAAGATCTTGTCGTCAAGTACAAAAAAGTAGAAGACAGTGGTCTAACCAATAAGATACAGAAGCTAAGCTGGCATTCAGTGGTGAAAAAAGGCTCCAGGTTTAACCAGAGGCTAACACAACTCACAGGGCTCGTGTCACAGACTGTTGACGAAAAATTTATTGAAGAAGAGAAGAAGTTCCGTGCAGTAGAGAAAACTGTGAAAACGCTCTGGAAGAACATCTCCACTTATTTGGAAGAATTTCAGGAGACAATGGAATGTCACAAGTCGTCAGGGCAGAATGTCAGTGATTTCTATCAAGAAGCTGCCACGTGTTCAGAGGTGTCCACTTATCAGAGAATACAGAAAAGGATCGGAGAAACTATCCTTTGTAGATTTATGGACAGTGTTCAGGTACAAGTTTTGTCTCCGCTCAATTCGTTACTCAACTTATTTCAAGGCCCGCAGCGTTTGATCCAGAAACGAAACGACAAGTGCTTGGACTACGATCGCTGGTCAAACAAGATTGACAAGATAAAAGACAGGGACAAGTTAAAAGCGGCAAAAGAAGAACTCGAACTTGCCAAGAAGAACTACGAAGCTCTAAACACGCAGCTGCTTGAAGAGATTCCTGGTTTTACTGAGATGTGCATGGCTCTGACGGTGGACTGTCTAGAAAACTTTGCCTTAGCACAGAACGGACTATACTGTGAAATACAGCAAGATTATGACGAGCTGTTACAGTTGCCAGTCGTGCAGGCAGATGACGAGGACATTGTTGAGCATCACAGCAAAAGATCAGTACAAGTTATGGAACAGTTTTCAGATCTGAGCTTTATTCCGTGTAGTTTTGTGGCTAAAGACAGTTCACGCAAGAAACGGCGATCATTAAAAATTCCAAGCACGCCTTCCCACGACCCAGACGCAGTAGAAGATGATAGCGAGACCAAGAACGGCTTGTTAAATACCAAAGAAGGCGAGCTGGGTGGGGAGGGTGGGGGAGCAAAGAAAGGTCCACCACTCCCTTCCCCTGCGATTCTTCAACCACGGCCAGCGCCGCGGAGACTAAGTAGTAGAACAAGCCTGGAGCTCAAGGATGTTGACAGCTCACAACCAGTGGAAATAATCCCAGGGGAAAACAAACGCTACGTTGTCGAGTTCAACTTCGAAGCTCAAAATGCGGGGGAGTTGTCTGTATCCGAGGGGGATCTTGTCTCTGTCCTGCGTCACTCAGATAGCAGTGGTAACCCGGAATGGTGGCTGGTTCACTATAACGGAGCTTCGGGGTATATCCCGGAGAGTTATCTATCCCCGGTGGGTGACAGTGACAGTGACAATGATGGCGAAAATGATGATGGTGACGACAATACTGCACAGGACATAGATGGAACTGATACAAACGGTGTTAAAGATGATGATACTACATCCACGCAAGCTGAAACTGCTGTTAAGTTATACTACTGTGCTGAATTTGCGTTCGAGGCGAGCAGCGCGGCTGAGTTGAGTCTTGATGAAGGACAGTTAGTAATTGTGTTACAGAAACAAGATTTGACCGGGAATGACGAATGGTGGCTAGTGGAAGTGAACGGACAAAAAGGATATGTTCCTTCAAGTTATTTGACAGCAGTGGAGGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F1U2	Dynamin-binding protein OS=Danio rerio OX=7955 GN=dnmbp PE=2 SV=1
M0R4F8	Dynamin-binding protein OS=Rattus norvegicus OX=10116 GN=Dnmbp PE=1 SV=2
Q6XZF7	Dynamin-binding protein OS=Homo sapiens OX=9606 GN=DNMBP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004368 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF03114 all species →	BAR	BAR domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR051492 all species →	Family	Dynamin-binding and Rho GEF	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036274 all species →	Homologous_superfamily	HR1 repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22834 all species →	NUCLEAR FUSION PROTEIN FUS2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20705	DNMBP, ARHGEF36, TUBA; dynamin-binding protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.