Detailed information of evm.model.Ap4.3932 in Astrangia poculata

Genomic Location: Ap4:28991588...28994283
NR annotation: CAB3997557.1, E3 ubiquitin- ligase pub2 [Paramuricea clavata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001565 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02845
all species →		CUECUE domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003892
all species →		DomainUbiquitin system component CUEInterproscan
IPR000569
all species →		DomainHECT domainInterproscan
IPR009060
all species →		Homologous_superfamilyUBA-like superfamilyInterproscan
IPR035983
all species →		Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.Ap4.3932. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.3932.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP