Gene detail

Detailed information of evm.model.Ap4.3976 in Astrangia poculata

Genomic Location: Ap4:29170231...29175656
NR annotation: XP_044172199.1, LOW QUALITY PROTEIN: uncharacterized protein LOC122956576 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.3976

atgaacagacaagtcaagtttaaccctgaagtcaaacgcactgttttcattgaagaagacgaaatcgcttcacgtagttccgagtttcaggaagagaaccgcgctcaaaagagggctttacacgaatatcatttatcacgaaagcgatgccgcctttttttgcgtcaagatatctttgatgcattttggagtgtgtatgagcatgaagcatggagtagattggaagagttagttggaactcctgatgtgacggtcaacgatgtggagatgtttggtctcgaagccgttttgtctgtaaataaaaatgaaattgtgaagttatggcgtgaaagacttatgctaatgattccgtcagtgttacaacatgaattggttccatttcacgagcgttgggttcaagaccaatttaaagatcaagcaaacattgaagaaatgcaaaggagattgtgtgcaaaagcaaacacttcaaatcactggctgacagaacttgtaaatgaaatgcttgtatctcctgacactccatcaactcctgaaatcaactatgaaaacctatcaggtgcgttaaatgaactcgaagttgctcatccggagatttttcaagacttgcattcgtccgttgaatctactaaagtaaacaatccagatgaatgccttgacaccccaccaacacctgaactcagatatgacagaatgtcgcaagcactaaatgaggtgaactatatcaatgacgacatatgcgaagatacaccgttgattgtggaatccgctcttaacgtccacgaactagatgccctacagaacgagagcgaaatgtatgaagcagaagaaacagaatcagatgatacacttatagaggcgatgcaagattgggaaggaaaggaaatagaatcagtctttgaaacctggaattatgaacatcttttggaagacaaaaatgaaaatgacgtttgccttaagtcctcagagcaaattggctctggcagggacctgtggaaatctgacaaacactatactcttcgagaaataggtacaagaaaagtacgaaaattcaacactatgagcaccgattatcacctctcactgaaaccgcagacagatggaacccctcttttgagtcaacttggtaacattttcgattctctcgtggaggaaatgagcccaggcatgggcgaaaacgatttggtaagatttgtcttacaaagccgatcccttgattatcctatttctctaccatttatgcctcgtcatgaattaaatgcagagaggatcatgggagaagtgcaacgcgttttgcagtccaatgaaaaagtaaacttaaaagatgggatgcacgttcatttagtgcatgttggcatgccgcagggtggacgtgctctacgcaaaagaaaacattatggttttaacttgtccaagttcctggatgccaagaagtgtgtcattcgtatccgaaacaaagattccttgtgcctcgctcgtgcgttggtgacagacatagctcgccaagaagtaaatcccgactggaattcaattcgacaaggacgtcagctgcaatccattttggcaaaggaactgcaccagaaggccaaagttccagagggtctctgtggtttacccgaaattgctaagttccaggcagtcatcgaagattatcaaatcgttgtcctctctgctaaacattttaacgctgttatttttgaaggaccaaagcgtgaaaaacaaatctatctgtatctttacgaaaaccatttcgacatcttaacttctgtttctgcctttctgggaaaaagctactggtgtttggagtgcaagaaaggttacaacaacaaaaaagaccatcgttgtaacaaagtatgcaagtgctgtttcacagaaggatgtaacggagtgaaaatgaaagaaccgtggcgagaatgtggtacctgtcatagactgtttgcaggagacgaatgctatgccaatcactgccgtccaaacaaaaatggtcagtcggtatgtcaaagattctacaaatgcacaaaatgccaaaaaatcttctcgcacaaacgaagaagtgcaaaagatcaccaatgtggtgaaaagttgtgtttcaactgtgaagaatatgtggatcccaacacgcacctctgttacatgaaaccgatcaagtttgaggatgacgaacaagaagaagaagaagaagaaggacaaggaaaaaagaagaaaaacaaaggtaaacgaagacgcctttcagaagaaatgttttctgacgaagttgaagaagactacaatattgaagaagaagcagaacaagaatatttattctttgacatagaaacacgccaggaagagggacgtcacatagcaaatttattaattgtacaagacgagacgggatttgaagtggtgtttaaaggagacgattgtgtcgaacagtttgggtcctggctattagacggaacgcacgcaggtgccattgttatcgcgcacaacttccgctcttttgacggaatactgttgtgtgagtatttctataaacaatgcattcttccaacgttgatattaaatggcgcaaagatcatgtccatggacctcgaagaagccgaaatcaagttccgtgactcactgaatttcttaccgatgcctcttaaagccctgcctaaaacctttgggttaactgaactaaagaaagagttcttagaagaagaaacgattggtcttgttccacctcaaggataccaacctgctcgcaaacattccgttcttgctttgcaatggttgtcttggattcatcatcagaccggtgcccgtatactccatgcattgaacggtggagagcagcggatcgatggtaattatgttgacggttatgatcctgacacgaagatcatttacgagttcatgggctgtatgtggcatggttgcgccaaatgtttcttacctgataccaagaatccggtgaatgacaccagcatggaagaccttcttgagggaaccatccgtaaactagaacgcttcaagaagttgggataccaagtggaagtcaaatgggaatgtgaattcaagcacgagcttgccaatagtccagacatgagagacttcatccaaaacctcaaatttgatactcccttagagcctcgcgatgcgttttttggtggaaggaccaatgccacgtgtctcttcaaagaggtgacagaggatgagaaaattcattacgtagactttacctccttgtaccctttcacgaataaatatggaagctttcctatcaaacatcccgaaattttgaccagtgaagctctcatcaaccgctctcccactgaattctatggtctgatcaaatgcgacattctcccaccatcgtccctgtttcatccggtgctaccctaccgcgcccaaggaaaattgatgttcccattgtgcagaacgtgtgccgagaatttacaacaatcaccctgtaaacacaacgaagaagaacgtatgttgtctggaacttggtgttccattgaggtcgtaaaagctttggaaatgggatatcgtatggtccgaatggtggaagtttggaatttccccgaaaagtcctcgaagctgtttaccggatacatagatacctttctgaaaattaaacaagaagcaagcgggtggccatcatggtgtcaaacagagcaacagaagaggcaatacattagggactacgaacgaaaagaaggaatcagattggattatcataagattcgaaagaaccctgggcttcgttcgttagccaaactcatgcttaactcattttggggaaaattcgggcaacgtgacaacatgcctcaagtcgagcttgtcagggatcccgagcgctatttcaggcttctcacctgtcagtctacccagataaagaatattcagtttgtcaacgatgaatgcattgaagtgtactacactcaaggagagggatttgttcctgcttccaacaaaaccaatgttgtgattgctgccttcactacagctcaagcccgtctgaaactgtactctgttcttgaacagttgcagcatagagttctctatttcgacactgactctgtcatatttacaagtcaaccgaatgaatggatgccccaacttggtgattacttaggagaactcactaatgagcttgacgatgacgactacattaccaccttcgtttcagggggcccgaaaaattatgcgtaccaaaccaagaatgaaaaaacaagttgtaagattaggggctttacgcttaaccatagaggttcacagaagctcaattttcagtccatgtgtgaacaagtctgccgccctaatggagaagtcatctacttggaaaaccctcatttcatcaaacgggacgcgaaaacaaaaacaatatacacagtgaaacaggaaaagaagtatcaacttgtgtacgacaagagagtaatccatggttacatcacttacccctacggatttcgctga

Transcript

evm.model.Ap4.3976

ATGAACAGACAAGTCAAGTTTAACCCTGAAGTCAAACGCACTGTTTTCATTGAAGAAGACGAAATCGCTTCACGTAGTTCCGAGTTTCAGGAAGAGAACCGCGCTCAAAAGAGGGCTTTACACGAATATCATTTATCACGAAAGCGATGCCGCCTTTTTTTGCGTCAAGATATCTTTGATGCATTTTGGAGTGTGTATGAGCATGAAGCATGGAGTAGATTGGAAGAGTTAGTTGGAACTCCTGATGTGACGGTCAACGATGTGGAGATGTTTGGTCTCGAAGCCGTTTTGTCTGTAAATAAAAATGAAATTGTGAAGTTATGGCGTGAAAGACTTATGCTAATGATTCCGTCAGTGTTACAACATGAATTGGTTCCATTTCACGAGCGTTGGGTTCAAGACCAATTTAAAGATCAAGCAAACATTGAAGAAATGCAAAGGAGATTGTGTGCAAAAGCAAACACTTCAAATCACTGGCTGACAGAACTTGTAAATGAAATGCTTGTATCTCCTGACACTCCATCAACTCCTGAAATCAACTATGAAAACCTATCAGGTGCGTTAAATGAACTCGAAGTTGCTCATCCGGAGATTTTTCAAGACTTGCATTCGTCCGTTGAATCTACTAAAGTAAACAATCCAGATGAATGCCTTGACACCCCACCAACACCTGAACTCAGATATGACAGAATGTCGCAAGCACTAAATGAGGTGAACTATATCAATGACGACATATGCGAAGATACACCGTTGATTGTGGAATCCGCTCTTAACGTCCACGAACTAGATGCCCTACAGAACGAGAGCGAAATGTATGAAGCAGAAGAAACAGAATCAGATGATACACTTATAGAGGCGATGCAAGATTGGGAAGGAAAGGAAATAGAATCAGTCTTTGAAACCTGGAATTATGAACATCTTTTGGAAGACAAAAATGAAAATGACGTTTGCCTTAAGTCCTCAGAGCAAATTGGCTCTGGCAGGGACCTGTGGAAATCTGACAAACACTATACTCTTCGAGAAATAGGTACAAGAAAAGTACGAAAATTCAACACTATGAGCACCGATTATCACCTCTCACTGAAACCGCAGACAGATGGAACCCCTCTTTTGAGTCAACTTGGTAACATTTTCGATTCTCTCGTGGAGGAAATGAGCCCAGGCATGGGCGAAAACGATTTGGTAAGATTTGTCTTACAAAGCCGATCCCTTGATTATCCTATTTCTCTACCATTTATGCCTCGTCATGAATTAAATGCAGAGAGGATCATGGGAGAAGTGCAACGCGTTTTGCAGTCCAATGAAAAAGTAAACTTAAAAGATGGGATGCACGTTCATTTAGTGCATGTTGGCATGCCGCAGGGTGGACGTGCTCTACGCAAAAGAAAACATTATGGTTTTAACTTGTCCAAGTTCCTGGATGCCAAGAAGTGTGTCATTCGTATCCGAAACAAAGATTCCTTGTGCCTCGCTCGTGCGTTGGTGACAGACATAGCTCGCCAAGAAGTAAATCCCGACTGGAATTCAATTCGACAAGGACGTCAGCTGCAATCCATTTTGGCAAAGGAACTGCACCAGAAGGCCAAAGTTCCAGAGGGTCTCTGTGGTTTACCCGAAATTGCTAAGTTCCAGGCAGTCATCGAAGATTATCAAATCGTTGTCCTCTCTGCTAAACATTTTAACGCTGTTATTTTTGAAGGACCAAAGCGTGAAAAACAAATCTATCTGTATCTTTACGAAAACCATTTCGACATCTTAACTTCTGTTTCTGCCTTTCTGGGAAAAAGCTACTGGTGTTTGGAGTGCAAGAAAGGTTACAACAACAAAAAAGACCATCGTTGTAACAAAGTATGCAAGTGCTGTTTCACAGAAGGATGTAACGGAGTGAAAATGAAAGAACCGTGGCGAGAATGTGGTACCTGTCATAGACTGTTTGCAGGAGACGAATGCTATGCCAATCACTGCCGTCCAAACAAAAATGGTCAGTCGGTATGTCAAAGATTCTACAAATGCACAAAATGCCAAAAAATCTTCTCGCACAAACGAAGAAGTGCAAAAGATCACCAATGTGGTGAAAAGTTGTGTTTCAACTGTGAAGAATATGTGGATCCCAACACGCACCTCTGTTACATGAAACCGATCAAGTTTGAGGATGACGAACAAGAAGAAGAAGAAGAAGAAGGACAAGGAAAAAAGAAGAAAAACAAAGGTAAACGAAGACGCCTTTCAGAAGAAATGTTTTCTGACGAAGTTGAAGAAGACTACAATATTGAAGAAGAAGCAGAACAAGAATATTTATTCTTTGACATAGAAACACGCCAGGAAGAGGGACGTCACATAGCAAATTTATTAATTGTACAAGACGAGACGGGATTTGAAGTGGTGTTTAAAGGAGACGATTGTGTCGAACAGTTTGGGTCCTGGCTATTAGACGGAACGCACGCAGGTGCCATTGTTATCGCGCACAACTTCCGCTCTTTTGACGGAATACTGTTGTGTGAGTATTTCTATAAACAATGCATTCTTCCAACGTTGATATTAAATGGCGCAAAGATCATGTCCATGGACCTCGAAGAAGCCGAAATCAAGTTCCGTGACTCACTGAATTTCTTACCGATGCCTCTTAAAGCCCTGCCTAAAACCTTTGGGTTAACTGAACTAAAGAAAGAGTTCTTAGAAGAAGAAACGATTGGTCTTGTTCCACCTCAAGGATACCAACCTGCTCGCAAACATTCCGTTCTTGCTTTGCAATGGTTGTCTTGGATTCATCATCAGACCGGTGCCCGTATACTCCATGCATTGAACGGTGGAGAGCAGCGGATCGATGGTAATTATGTTGACGGTTATGATCCTGACACGAAGATCATTTACGAGTTCATGGGCTGTATGTGGCATGGTTGCGCCAAATGTTTCTTACCTGATACCAAGAATCCGGTGAATGACACCAGCATGGAAGACCTTCTTGAGGGAACCATCCGTAAACTAGAACGCTTCAAGAAGTTGGGATACCAAGTGGAAGTCAAATGGGAATGTGAATTCAAGCACGAGCTTGCCAATAGTCCAGACATGAGAGACTTCATCCAAAACCTCAAATTTGATACTCCCTTAGAGCCTCGCGATGCGTTTTTTGGTGGAAGGACCAATGCCACGTGTCTCTTCAAAGAGGTGACAGAGGATGAGAAAATTCATTACGTAGACTTTACCTCCTTGTACCCTTTCACGAATAAATATGGAAGCTTTCCTATCAAACATCCCGAAATTTTGACCAGTGAAGCTCTCATCAACCGCTCTCCCACTGAATTCTATGGTCTGATCAAATGCGACATTCTCCCACCATCGTCCCTGTTTCATCCGGTGCTACCCTACCGCGCCCAAGGAAAATTGATGTTCCCATTGTGCAGAACGTGTGCCGAGAATTTACAACAATCACCCTGTAAACACAACGAAGAAGAACGTATGTTGTCTGGAACTTGGTGTTCCATTGAGGTCGTAAAAGCTTTGGAAATGGGATATCGTATGGTCCGAATGGTGGAAGTTTGGAATTTCCCCGAAAAGTCCTCGAAGCTGTTTACCGGATACATAGATACCTTTCTGAAAATTAAACAAGAAGCAAGCGGGTGGCCATCATGGTGTCAAACAGAGCAACAGAAGAGGCAATACATTAGGGACTACGAACGAAAAGAAGGAATCAGATTGGATTATCATAAGATTCGAAAGAACCCTGGGCTTCGTTCGTTAGCCAAACTCATGCTTAACTCATTTTGGGGAAAATTCGGGCAACGTGACAACATGCCTCAAGTCGAGCTTGTCAGGGATCCCGAGCGCTATTTCAGGCTTCTCACCTGTCAGTCTACCCAGATAAAGAATATTCAGTTTGTCAACGATGAATGCATTGAAGTGTACTACACTCAAGGAGAGGGATTTGTTCCTGCTTCCAACAAAACCAATGTTGTGATTGCTGCCTTCACTACAGCTCAAGCCCGTCTGAAACTGTACTCTGTTCTTGAACAGTTGCAGCATAGAGTTCTCTATTTCGACACTGACTCTGTCATATTTACAAGTCAACCGAATGAATGGATGCCCCAACTTGGTGATTACTTAGGAGAACTCACTAATGAGCTTGACGATGACGACTACATTACCACCTTCGTTTCAGGGGGCCCGAAAAATTATGCGTACCAAACCAAGAATGAAAAAACAAGTTGTAAGATTAGGGGCTTTACGCTTAACCATAGAGGTTCACAGAAGCTCAATTTTCAGTCCATGTGTGAACAAGTCTGCCGCCCTAATGGAGAAGTCATCTACTTGGAAAACCCTCATTTCATCAAACGGGACGCGAAAACAAAAACAATATACACAGTGAAACAGGAAAAGAAGTATCAACTTGTGTACGACAAGAGAGTAATCCATGGTTACATCACTTACCCCTACGGATTTCGCTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000059 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03175 all species →	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR004868 all species →	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33568 all species →	DNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15601	KDM3; [histone H3]-dimethyl-L-lysine9 demethylase	EC:1.14.11.65	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.