Gene detail

Detailed information of evm.model.Ap4.4736 in Astrangia poculata

Genomic Location: Ap4:33059230...33062645
NR annotation: XP_020622227.1, uncharacterized protein LOC110059845 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.4736

atggagaaaatatgttctcaataccagaaatatcactcaaacagtggcactgaaatcacacaggagtcacttgtgaatcaggctagagagtacttgaccactgtacgacctgtggaaagatttatgttcctgagctcagatttttatagaaatgtgctgggaaaaatttctcagaactttgaaagtaatgaacagagcatacagaagattatgactggatttaacagcttagaaaaatatggagttaacttgtggaaattcccttggcgcaaagagtaccacagcattaagctttacacggcgttttttaagtacaacattgaacagcaacttcaagacacagaagtcacatttgatattttacaatcccttggctacacagtgaagcagcaacaggaagtttcaattaaagagccggatcgagaacgtgccatttggatggcttttaacctctttctagttcaggtggacttgcaagtgataaaggaaattatggatcactttcctaacggtgagttcaccttgaaggagattgttagggcaaggtcaaaaacaaccgacgtagaagatgccgttaaatatctggcaacaaaagctgctaaacggcgtaaacttgatgagccacaagtgggtgatgctttatctcatgggcacacgaaagatacccacattggacgaattgacagccacacgtttaacaacttacagcccgataccagacgctcaggtgaagtaacctctgctgcccaagacacaagaaggccagcaaagttttcagtactgtcaaagggaagagacgatgttgctgccgacactgatgattcttcaactgagtctgcggttaccgttaagtatccttctgttggcgcgcctacagaatacaaagtgccatctggaaacactggcgggcaatatttaaccagcatgagcactgaacaactcggacatttttctgaccaggatttatatggtgtaagtcctgaaggaagccaacgttatggcgccacacagcataactttgatccacgttacagcacagttcctccacctaggtcagtttctgacgcaagacagcaaaacttagatgcacgtcacagcacggttcccagtcaagctggttcaatatatgatgcaacacagcataacttagatccacgttacagcacagttcctccagctaggtcagtttatgaggcaggacagcataatttaaatgcacgttacagcacatttcctcaagaagggtcatcacagttcccggagaataccaaaggaacccaacgtcgccacacagcacctctagctgggcatacacagtaccttgactacactaaagatagaatggatgcacctacactgttaccccatgtgtcagtaccaccaatgcatcccatccatcagtataccaatcaaagttatacagggtctgtgagaggtgaccctaggggacaccctggtatggtcacccagggaggtgaagtgggtccgttaaacaaagtcattgctgacacctatggatatcagtccaagatgtctgcaagaacagaaacacagccgcatggatctgctgctggagatcccaggtatgccaacattggggatttcaacagctctgctaatcggcagattgatgacagaggtgcgaaattaaggcattctcgcggttctggtgccgaaccgatggatgtggaacaaatagaaagctctcatgaacgtcgagatgatgctttttcacgttataatggaattgcagaagcggcatttgcaaaagccacaggccattcaggagttacagaattaaacgccacaatgaaacgtcagctaagtcttcaacctggtgatggcttgtctggcaaagcatctgaacagcttagtagtgcacccactgaacacagaaggcagtatggtagcgaaagtactgccagtgcaccggaggctgcaagatctagagatggaaccacaagagaagcacagccaagcaggttgctctaccaaaatggaagtaatttcccttctactaaagaagctggtcagaagacgagatccagtgcagctgacagtacgagtcgtactgccaagaaaattgacgccccagtctcatcgcctatttcgtcatggaaagccttagctcagggagatcggggtaaacatgcagcccacagcttaaaaaatgatcttgacactgaaacattacaggagaggaaagcactccaaacagatgtcaaacgtgtcgatgctatatgtgatcagtgtatgttgcagggtacaatcatttgccgaaactgtttccgaattatttgtagaaagtgcaagcatatctttgagatcgaacattgcagtacaaccaaaggtgaccatgcttttgtggatttaaaggacagcaaaccgcagaaaatgaaatccgttgatcccaaagcgtcctcaagtcaacattatgcaaatatacacgagggctttgacaaagtaaatgattggtcctgttcccgatgcacttaccttaatcctccagatcacacaatctgtgccatgtgtgctacgacacgtggggttggttctgtggaactaacagaggctggaagcagagtctgcagggagtgtacatatcacaacaaggaaaacgctacggtgtgtgaagcttgtcacaaaacgctggacttgcaaaaccctgagacgtctgtgtag

Transcript

evm.model.Ap4.4736

ATGGAGAAAATATGTTCTCAATACCAGAAATATCACTCAAACAGTGGCACTGAAATCACACAGGAGTCACTTGTGAATCAGGCTAGAGAGTACTTGACCACTGTACGACCTGTGGAAAGATTTATGTTCCTGAGCTCAGATTTTTATAGAAATGTGCTGGGAAAAATTTCTCAGAACTTTGAAAGTAATGAACAGAGCATACAGAAGATTATGACTGGATTTAACAGCTTAGAAAAATATGGAGTTAACTTGTGGAAATTCCCTTGGCGCAAAGAGTACCACAGCATTAAGCTTTACACGGCGTTTTTTAAGTACAACATTGAACAGCAACTTCAAGACACAGAAGTCACATTTGATATTTTACAATCCCTTGGCTACACAGTGAAGCAGCAACAGGAAGTTTCAATTAAAGAGCCGGATCGAGAACGTGCCATTTGGATGGCTTTTAACCTCTTTCTAGTTCAGGTGGACTTGCAAGTGATAAAGGAAATTATGGATCACTTTCCTAACGGTGAGTTCACCTTGAAGGAGATTGTTAGGGCAAGGTCAAAAACAACCGACGTAGAAGATGCCGTTAAATATCTGGCAACAAAAGCTGCTAAACGGCGTAAACTTGATGAGCCACAAGTGGGTGATGCTTTATCTCATGGGCACACGAAAGATACCCACATTGGACGAATTGACAGCCACACGTTTAACAACTTACAGCCCGATACCAGACGCTCAGGTGAAGTAACCTCTGCTGCCCAAGACACAAGAAGGCCAGCAAAGTTTTCAGTACTGTCAAAGGGAAGAGACGATGTTGCTGCCGACACTGATGATTCTTCAACTGAGTCTGCGGTTACCGTTAAGTATCCTTCTGTTGGCGCGCCTACAGAATACAAAGTGCCATCTGGAAACACTGGCGGGCAATATTTAACCAGCATGAGCACTGAACAACTCGGACATTTTTCTGACCAGGATTTATATGGTGTAAGTCCTGAAGGAAGCCAACGTTATGGCGCCACACAGCATAACTTTGATCCACGTTACAGCACAGTTCCTCCACCTAGGTCAGTTTCTGACGCAAGACAGCAAAACTTAGATGCACGTCACAGCACGGTTCCCAGTCAAGCTGGTTCAATATATGATGCAACACAGCATAACTTAGATCCACGTTACAGCACAGTTCCTCCAGCTAGGTCAGTTTATGAGGCAGGACAGCATAATTTAAATGCACGTTACAGCACATTTCCTCAAGAAGGGTCATCACAGTTCCCGGAGAATACCAAAGGAACCCAACGTCGCCACACAGCACCTCTAGCTGGGCATACACAGTACCTTGACTACACTAAAGATAGAATGGATGCACCTACACTGTTACCCCATGTGTCAGTACCACCAATGCATCCCATCCATCAGTATACCAATCAAAGTTATACAGGGTCTGTGAGAGGTGACCCTAGGGGACACCCTGGTATGGTCACCCAGGGAGGTGAAGTGGGTCCGTTAAACAAAGTCATTGCTGACACCTATGGATATCAGTCCAAGATGTCTGCAAGAACAGAAACACAGCCGCATGGATCTGCTGCTGGAGATCCCAGGTATGCCAACATTGGGGATTTCAACAGCTCTGCTAATCGGCAGATTGATGACAGAGGTGCGAAATTAAGGCATTCTCGCGGTTCTGGTGCCGAACCGATGGATGTGGAACAAATAGAAAGCTCTCATGAACGTCGAGATGATGCTTTTTCACGTTATAATGGAATTGCAGAAGCGGCATTTGCAAAAGCCACAGGCCATTCAGGAGTTACAGAATTAAACGCCACAATGAAACGTCAGCTAAGTCTTCAACCTGGTGATGGCTTGTCTGGCAAAGCATCTGAACAGCTTAGTAGTGCACCCACTGAACACAGAAGGCAGTATGGTAGCGAAAGTACTGCCAGTGCACCGGAGGCTGCAAGATCTAGAGATGGAACCACAAGAGAAGCACAGCCAAGCAGGTTGCTCTACCAAAATGGAAGTAATTTCCCTTCTACTAAAGAAGCTGGTCAGAAGACGAGATCCAGTGCAGCTGACAGTACGAGTCGTACTGCCAAGAAAATTGACGCCCCAGTCTCATCGCCTATTTCGTCATGGAAAGCCTTAGCTCAGGGAGATCGGGGTAAACATGCAGCCCACAGCTTAAAAAATGATCTTGACACTGAAACATTACAGGAGAGGAAAGCACTCCAAACAGATGTCAAACGTGTCGATGCTATATGTGATCAGTGTATGTTGCAGGGTACAATCATTTGCCGAAACTGTTTCCGAATTATTTGTAGAAAGTGCAAGCATATCTTTGAGATCGAACATTGCAGTACAACCAAAGGTGACCATGCTTTTGTGGATTTAAAGGACAGCAAACCGCAGAAAATGAAATCCGTTGATCCCAAAGCGTCCTCAAGTCAACATTATGCAAATATACACGAGGGCTTTGACAAAGTAAATGATTGGTCCTGTTCCCGATGCACTTACCTTAATCCTCCAGATCACACAATCTGTGCCATGTGTGCTACGACACGTGGGGTTGGTTCTGTGGAACTAACAGAGGCTGGAAGCAGAGTCTGCAGGGAGTGTACATATCACAACAAGGAAAACGCTACGGTGTGTGAAGCTTGTCACAAAACGCTGGACTTGCAAAACCCTGAGACGTCTGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UM82	Spermatogenesis-associated protein 2 OS=Homo sapiens OX=9606 GN=SPATA2 PE=1 SV=2
Q66HP6	Spermatogenesis-associated protein 2 OS=Rattus norvegicus OX=10116 GN=Spata2 PE=2 SV=1
Q8K004	Spermatogenesis-associated protein 2 OS=Mus musculus OX=10090 GN=Spata2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008604 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21388 all species →	SPATA2_PUB-like	Spermatogenesis-associated protein 2, PUB-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048839 all species →	Domain	Spermatogenesis-associated protein 2, PUB-like domain	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR036339 all species →	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15326 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17595	SPATA2; spermatogenesis-associated protein 2	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.