Gene detail

Detailed information of evm.model.Ap4.5064 in Astrangia poculata

Genomic Location: Ap4:35287552...35288808
NR annotation: XP_020610167.1, metal tolerance protein 11-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SAJ7	Metal tolerance protein 9 OS=Arabidopsis thaliana OX=3702 GN=MTP9 PE=3 SV=2
O80632	Metal tolerance protein 11 OS=Arabidopsis thaliana OX=3702 GN=MTP11 PE=2 SV=1
Q0WU02	Metal tolerance protein 10 OS=Arabidopsis thaliana OX=3702 GN=MTP10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16916 all species →	ZT_dimer	Dimerisation domain of Zinc Transporter	Domain	Interproscan
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036837 all species →	Homologous_superfamily	Cation efflux protein, cytoplasmic domain superfamily	Interproscan
IPR027470 all species →	Domain	Cation efflux protein, cytoplasmic domain	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR050291 all species →	Family	Cation Diffusion Facilitator Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43840 all species →	MITOCHONDRIAL METAL TRANSPORTER 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.5064.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.5064 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

43TPM > 0

4Conditions

4,039.2Max TPM

1,470.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	12	1,610.98	3,635.35
whole organism · heat control	12	12	1,306.70	3,790.86
whole organism · cold challenge	12	9	1,024.55	2,732.14
whole organism · heat challenge	11	10	1,957.02	4,039.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	3,635.35
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	3,420.30
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	2,492.57
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	2,490.66
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	2,319.11
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,966.34
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,811.61
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,412.92
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,215.58
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,089.82
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	352.43
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	346.97
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	3,790.86
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	2,501.12
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,505.36
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,264.04
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,214.04
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,144.22
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	966.73
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	900.92
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	899.66
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	668.17
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	528.61
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	296.63
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	2,732.14
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	2,554.02
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	2,049.57
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,475.36
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,388.70
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	874.95
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	555.07
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	472.53
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	192.30
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	4,039.17
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	3,818.54
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	3,460.90
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	2,501.99
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	2,464.44
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,997.11
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,585.92
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	921.16
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	384.45
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	353.55
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.