Genomic Location: Ap4:35322797...35352415
NR annotation: CAH3031757.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.5068_evm.model.Ap4.5070 |
| Transcript |
| evm.model.Ap4.5068_evm.model.Ap4.5070 |
| Protein |
| evm.model.Ap4.5068_evm.model.Ap4.5070 |
| UniProt accession | Description |
|---|---|
| A0A8I3PDQ1 | Enhancer of filamentation 1 OS=Canis lupus familiaris OX=9615 GN=NEDD9 PE=1 SV=1 |
| O35177 | Enhancer of filamentation 1 OS=Mus musculus OX=10090 GN=Nedd9 PE=1 SV=2 |
| Q14511 | Enhancer of filamentation 1 OS=Homo sapiens OX=9606 GN=NEDD9 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003917 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12026 all species → | CAS_C | Crk-Associated Substrate C-terminal domain | Domain | Interproscan |
| PF00018 all species → | SH3_1 | SH3 domain | Domain | Interproscan |
| PF08824 all species → | Serine_rich | Serine rich protein interaction domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021901 all species → | Domain | CAS family, C-terminal | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR038319 all species → | Homologous_superfamily | CAS, serine rich four helix bundle domain superfamily | Interproscan |
| IPR037362 all species → | Family | CAS family | Interproscan |
| IPR014928 all species → | Domain | Serine rich protein interaction domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10654 all species → | CAS SCAFFOLDING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007169 all species → | Biological Process | cell surface receptor protein tyrosine kinase signaling pathway | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0090527 all species → | Biological Process | obsolete actin filament reorganization | Interproscan |
evm.model.Ap4.5068_evm.model.Ap4.5070.Transcript abundance of evm.model.Ap4.5068_evm.model.Ap4.5070 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
