Gene detail

Detailed information of evm.model.Ap4.5224 in Astrangia poculata

Genomic Location: Ap4:36850467...36854016
NR annotation: XP_020601371.1, uncharacterized protein LOC110040478 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3AET6	Glycine cleavage system H protein OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=gcvH PE=3 SV=1
Q8CPW8	Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=gcvH PE=3 SV=1
Q5HQR3	Glycine cleavage system H protein OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=gcvH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01597 all species →	GCV_H	Glycine cleavage H-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033753 all species →	Family	Glycine cleavage system H-protein/Simiate	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR002930 all species →	Family	Glycine cleavage system H-protein	Interproscan
IPR017453 all species →	Family	Glycine cleavage system H-protein, subgroup	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11715 all species →	GLYCINE CLEAVAGE SYSTEM H PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02437	gcvH, GCSH; glycine cleavage system H protein	-	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.