Gene detail

Detailed information of evm.model.Ap4.525 in Astrangia poculata

Genomic Location: Ap4:5286204...5306904
NR annotation: XP_020601784.1, oxysterol-binding protein-related protein 11-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.525

atggcggtcgctgaagatattttaaaggatccgtactttgccgacctagatatcgacctaagccagttttcagaagaagaaaagaccgttattcttggtgttatgcaaaaagccaaggttcttgaccaacaggatgacgacaaatttaggaaaccaactgagggacagcttagcaaatggactaatcttatgaagggctggcagtttagatggttcactctagatcctgattctggattgctggaatattatgtggacaaagagaagaagaagcttgggcctagaggatcagtttatcttggaggaagcatgatagcacctagtgacgaggctgattcattcacattcactgttagtgcagccaatggtgatatttttaaacttagagccaatgatgctaaagaaagacaagactggataaacaaactgaggagcgtggctgagtttcatacatcaagtattgctcaggctgccccaccattacacccaacacctggtttttctgcaccaccccctcattcaaccagcaccgtgaagcacccagccacagcggcatcgtcaactgccccctctggtgtggtgtcggctgatcaaatcaagacagagtcccctaaactggtccctaaaacccaccacatgtctgagaaaatcgtgtcaggattgtcccagatccgagaagatttgtacagaatagaagatcaacagatggtttttattgatcagttggagctggacccaactggagaagaatcactttttccattggataatgaagtacttattctgaaggctactgctcaggcagcccttggtactcttcaccactgtttttcaatccttcaaggacaggctgctggttttcaaactgaagttccagagcacgattggcatcaagaagaaaaacccaccgaaattcaaagtgagaccagcaactacgctatgagtcggagacgtcatttaagcttcaagtctcaaggagagcgaactacgggagaaagtcgacattttggattccacaagagtccttctactccaaaaacacaaagaaaagatggaaaaaatacagaaattacagaggattccacaatatcatgttgcgaaaaagcaagagccgggatgaaacacaatgtcggtcacagtgaggaggtaactgacgaggaggcttattgttcaggagaggagcctgaaaaccagtcagtagaggaacacaaaagtgttatattgcatctcctctctcaactcaagctgggaatggacctcactaaggttgttttaccaacgttcattttagagccgcgatcgttgctggagatgtttgcggacttttttgctcatcctgatctgtttgttaaaattcctgatggtctcactgcagaggatagaatcttagctgttttagaattctacttaacttctttccatgctggaagaaagggtgctttagccaagaaaccttacaatcctatattaggagagacgtttcactgttcgtggaaggtgccatgtacatccaaccccaaacacgcttctacaaacagccatatcgaccatactacgactgccacggatgataacctaacgttcgtcgcagagcaagtttcccatcatcctccgatctctggattttacgctgagtgtccgagtaagaagctgtgttttaatgcgcacatttggacgaagtccaagttttacggcatgtctataggtgtggtgaatcaaggagtaggtgttgtttctctgttagagcacaacgaagattacgtcataacgtttcctagcacgtattgcaggtcaattttaacctttccctgggtggagttaggaggcaaagttcacatcacgtgcgccaagactggttacaacgcgtcggtcacgtttcacacaaagccgttttatggcgggaaacttcatcgcgtcacaggcgaggtgaagaacacaactactgggagagtgatctgtaaagtgaatggagagtggaatggaaaggtagaactcagcttcacgagccatcaggaagaacctagaatcctggacacacatttacttccagtatgtcgtaagcgagtgtgtccactgtcaaaccaggaagagtttgagtctcgccggttatggcacaaagtcacgcattcgctaaagacgaatgacatcgagtcagcgacgtcagctaaacacgagcttgaagaaagacaacgaaaagaagctagagagagaaaagatactggtgtagagtggaagacaaaactatttcatcgtcatggtgacggatggatgtacaacaatcacttgaaacatttagtcaagcccagcgcagaggaagcgactgctacaacaacccaacaaccgacagaaggataa

Transcript

evm.model.Ap4.525

ATGGCGGTCGCTGAAGATATTTTAAAGGATCCGTACTTTGCCGACCTAGATATCGACCTAAGCCAGTTTTCAGAAGAAGAAAAGACCGTTATTCTTGGTGTTATGCAAAAAGCCAAGGTTCTTGACCAACAGGATGACGACAAATTTAGGAAACCAACTGAGGGACAGCTTAGCAAATGGACTAATCTTATGAAGGGCTGGCAGTTTAGATGGTTCACTCTAGATCCTGATTCTGGATTGCTGGAATATTATGTGGACAAAGAGAAGAAGAAGCTTGGGCCTAGAGGATCAGTTTATCTTGGAGGAAGCATGATAGCACCTAGTGACGAGGCTGATTCATTCACATTCACTGTTAGTGCAGCCAATGGTGATATTTTTAAACTTAGAGCCAATGATGCTAAAGAAAGACAAGACTGGATAAACAAACTGAGGAGCGTGGCTGAGTTTCATACATCAAGTATTGCTCAGGCTGCCCCACCATTACACCCAACACCTGGTTTTTCTGCACCACCCCCTCATTCAACCAGCACCGTGAAGCACCCAGCCACAGCGGCATCGTCAACTGCCCCCTCTGGTGTGGTGTCGGCTGATCAAATCAAGACAGAGTCCCCTAAACTGGTCCCTAAAACCCACCACATGTCTGAGAAAATCGTGTCAGGATTGTCCCAGATCCGAGAAGATTTGTACAGAATAGAAGATCAACAGATGGTTTTTATTGATCAGTTGGAGCTGGACCCAACTGGAGAAGAATCACTTTTTCCATTGGATAATGAAGTACTTATTCTGAAGGCTACTGCTCAGGCAGCCCTTGGTACTCTTCACCACTGTTTTTCAATCCTTCAAGGACAGGCTGCTGGTTTTCAAACTGAAGTTCCAGAGCACGATTGGCATCAAGAAGAAAAACCCACCGAAATTCAAAGTGAGACCAGCAACTACGCTATGAGTCGGAGACGTCATTTAAGCTTCAAGTCTCAAGGAGAGCGAACTACGGGAGAAAGTCGACATTTTGGATTCCACAAGAGTCCTTCTACTCCAAAAACACAAAGAAAAGATGGAAAAAATACAGAAATTACAGAGGATTCCACAATATCATGTTGCGAAAAAGCAAGAGCCGGGATGAAACACAATGTCGGTCACAGTGAGGAGGTAACTGACGAGGAGGCTTATTGTTCAGGAGAGGAGCCTGAAAACCAGTCAGTAGAGGAACACAAAAGTGTTATATTGCATCTCCTCTCTCAACTCAAGCTGGGAATGGACCTCACTAAGGTTGTTTTACCAACGTTCATTTTAGAGCCGCGATCGTTGCTGGAGATGTTTGCGGACTTTTTTGCTCATCCTGATCTGTTTGTTAAAATTCCTGATGGTCTCACTGCAGAGGATAGAATCTTAGCTGTTTTAGAATTCTACTTAACTTCTTTCCATGCTGGAAGAAAGGGTGCTTTAGCCAAGAAACCTTACAATCCTATATTAGGAGAGACGTTTCACTGTTCGTGGAAGGTGCCATGTACATCCAACCCCAAACACGCTTCTACAAACAGCCATATCGACCATACTACGACTGCCACGGATGATAACCTAACGTTCGTCGCAGAGCAAGTTTCCCATCATCCTCCGATCTCTGGATTTTACGCTGAGTGTCCGAGTAAGAAGCTGTGTTTTAATGCGCACATTTGGACGAAGTCCAAGTTTTACGGCATGTCTATAGGTGTGGTGAATCAAGGAGTAGGTGTTGTTTCTCTGTTAGAGCACAACGAAGATTACGTCATAACGTTTCCTAGCACGTATTGCAGGTCAATTTTAACCTTTCCCTGGGTGGAGTTAGGAGGCAAAGTTCACATCACGTGCGCCAAGACTGGTTACAACGCGTCGGTCACGTTTCACACAAAGCCGTTTTATGGCGGGAAACTTCATCGCGTCACAGGCGAGGTGAAGAACACAACTACTGGGAGAGTGATCTGTAAAGTGAATGGAGAGTGGAATGGAAAGGTAGAACTCAGCTTCACGAGCCATCAGGAAGAACCTAGAATCCTGGACACACATTTACTTCCAGTATGTCGTAAGCGAGTGTGTCCACTGTCAAACCAGGAAGAGTTTGAGTCTCGCCGGTTATGGCACAAAGTCACGCATTCGCTAAAGACGAATGACATCGAGTCAGCGACGTCAGCTAAACACGAGCTTGAAGAAAGACAACGAAAAGAAGCTAGAGAGAGAAAAGATACTGGTGTAGAGTGGAAGACAAAACTATTTCATCGTCATGGTGACGGATGGATGTACAACAATCACTTGAAACATTTAGTCAAGCCCAGCGCAGAGGAAGCGACTGCTACAACAACCCAACAACCGACAGAAGGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXB4	Oxysterol-binding protein-related protein 11 OS=Homo sapiens OX=9606 GN=OSBPL11 PE=1 SV=2
Q8CI95	Oxysterol-binding protein-related protein 11 OS=Mus musculus OX=10090 GN=Osbpl11 PE=1 SV=2
Q9BXB5	Oxysterol-binding protein-related protein 10 OS=Homo sapiens OX=9606 GN=OSBPL10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01237 all species →	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000648 all species →	Family	Oxysterol-binding protein	Interproscan
IPR037239 all species →	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018494 all species →	Conserved_site	Oxysterol-binding protein, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10972 all species →	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0015248 all species →	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20465	OSBPL9_10_11, ORP9_10_11; oxysterol-binding protein-related protein 9/10/11	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.