Gene detail

Detailed information of evm.model.Ap4.5294 in Astrangia poculata

Genomic Location: Ap4:37605083...37623763
NR annotation: CAH3041671.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5294

atgtcggtgaaccgtggcccagcacaacaaattaaacttgccattgagaaggaaggacaacttccactactcacaacatttgatcagagtcgaccactagaggaaattgtcagagatgtctgctcaacttggtctttaccaattccagagcagtatgctttccaatatgctgactacaactgttacataactgaagaaaaccgaagtggaataaagaatggagcagtactgaagctcacactctcatcagctaaacttgcacaggagatatttgaacgcctacaatcatccaaccctgaagaaaaaaggaatgctttgtcaactttatcaagtatatcagaggattcaacctttgccagtgagtttattaaaaggaatggacttgggcttcttattaacatggtagaaggcaaaccagaaatcaacgagtctctagctcactgcctgacatcttttcatgaactgatggatcatggtgaagtatcatgggatatcctcacacatggatttataaaaaatttgacagtatttgtgaacaagaagaatcctgtggatgccacggtgctcaagagatgtctatcaatcttagaagctgtgtccacgaacagccccacgttttatccaattgtagaaaaagaagtagtatttgagaatctcatactccatcttaaaaactctaatcaagatattcagctgtatgccattgcccttatcaacagcctttttatgcgaacaacaaataaaagacaatttgcagatactctttcaagaaaaggagtaaggacatatatcatgaatgacataatccgtgactccaaggccatgaaaaatgagatggagcaccagctgtatgtgtatcaagccctcatattccgcagtctgttggtagactttgtcttcaccaaaggaaatgctcaaaaccagaacctttatgaaagtcttgatactttgaagcgtgcggcatttgaatcagataatgtgacgtctagttcagtcagacctctctcacaagcaggcgaccagtttaaagacttgaaaagactcggttttgtggacattgaatcgccagcaaatgacttcagtgaagttcctccaggtcttttacctctgcacacaatggtttattttgcgcggaaacacgaggagcagtatcgcagggtcattctggaaaatctcagtcgaggtgatgactacgagtgcccgtttgctcgcaccagtattgcacttaccaaaatgctgtgtgaagtcctggaaatcaatggagaaccaccatctgattccggtaaagagtactacccgatatttttcaccatggactttgcattcgaagagttcttctgcatttgtattcaacttttaaacaagacatggaaagagatgagagccacttcaggagatttcagtcgtgttatgcaagtggtcaaggatcagatctgcagagccctcaaagacaaacatctctctatggaattgtttaagacgaacgtgttcaacttaggatattcacaaattgttaaaattcttcaagaagagatccatgcaaggaacatcatggaattaaaagccaaacctgttgtagaacttagagaacaagtgcttccagaactaaaagaattagtcaagcaacagagattggatcagcttattcaaggagcccagtttgacaggaccccggggcgagcacgcgggagagataaaatctggtattgtaggttgtcaccgaatttaaaatttctccattatggcgactgtcaagagggccaagcgcctcctcttgaaaatcttccaaacaaattaccaatcgccaaaattaaaaacctgctggttggaaaggattgtcctcatagtaaagatcggaaattcagcaaagcgtatgtaactttatgtttttctcttatgtacgaaagtgagacagaggagaaacatctcgactttatcgcagcaaccccggcaacgtttgccatttggactgatggcttagcaactttactcaacaaagagatgccgtcttcggagtcacacgaagaactagaaaccctcctcaatatggaaatgaaactcagattattagacttggagaatataacgattcctgcgaccccgcctccagtaccggcagagcccccgaattttaactttgtctatgactttagttag

Transcript

evm.model.Ap4.5294

ATGTCGGTGAACCGTGGCCCAGCACAACAAATTAAACTTGCCATTGAGAAGGAAGGACAACTTCCACTACTCACAACATTTGATCAGAGTCGACCACTAGAGGAAATTGTCAGAGATGTCTGCTCAACTTGGTCTTTACCAATTCCAGAGCAGTATGCTTTCCAATATGCTGACTACAACTGTTACATAACTGAAGAAAACCGAAGTGGAATAAAGAATGGAGCAGTACTGAAGCTCACACTCTCATCAGCTAAACTTGCACAGGAGATATTTGAACGCCTACAATCATCCAACCCTGAAGAAAAAAGGAATGCTTTGTCAACTTTATCAAGTATATCAGAGGATTCAACCTTTGCCAGTGAGTTTATTAAAAGGAATGGACTTGGGCTTCTTATTAACATGGTAGAAGGCAAACCAGAAATCAACGAGTCTCTAGCTCACTGCCTGACATCTTTTCATGAACTGATGGATCATGGTGAAGTATCATGGGATATCCTCACACATGGATTTATAAAAAATTTGACAGTATTTGTGAACAAGAAGAATCCTGTGGATGCCACGGTGCTCAAGAGATGTCTATCAATCTTAGAAGCTGTGTCCACGAACAGCCCCACGTTTTATCCAATTGTAGAAAAAGAAGTAGTATTTGAGAATCTCATACTCCATCTTAAAAACTCTAATCAAGATATTCAGCTGTATGCCATTGCCCTTATCAACAGCCTTTTTATGCGAACAACAAATAAAAGACAATTTGCAGATACTCTTTCAAGAAAAGGAGTAAGGACATATATCATGAATGACATAATCCGTGACTCCAAGGCCATGAAAAATGAGATGGAGCACCAGCTGTATGTGTATCAAGCCCTCATATTCCGCAGTCTGTTGGTAGACTTTGTCTTCACCAAAGGAAATGCTCAAAACCAGAACCTTTATGAAAGTCTTGATACTTTGAAGCGTGCGGCATTTGAATCAGATAATGTGACGTCTAGTTCAGTCAGACCTCTCTCACAAGCAGGCGACCAGTTTAAAGACTTGAAAAGACTCGGTTTTGTGGACATTGAATCGCCAGCAAATGACTTCAGTGAAGTTCCTCCAGGTCTTTTACCTCTGCACACAATGGTTTATTTTGCGCGGAAACACGAGGAGCAGTATCGCAGGGTCATTCTGGAAAATCTCAGTCGAGGTGATGACTACGAGTGCCCGTTTGCTCGCACCAGTATTGCACTTACCAAAATGCTGTGTGAAGTCCTGGAAATCAATGGAGAACCACCATCTGATTCCGGTAAAGAGTACTACCCGATATTTTTCACCATGGACTTTGCATTCGAAGAGTTCTTCTGCATTTGTATTCAACTTTTAAACAAGACATGGAAAGAGATGAGAGCCACTTCAGGAGATTTCAGTCGTGTTATGCAAGTGGTCAAGGATCAGATCTGCAGAGCCCTCAAAGACAAACATCTCTCTATGGAATTGTTTAAGACGAACGTGTTCAACTTAGGATATTCACAAATTGTTAAAATTCTTCAAGAAGAGATCCATGCAAGGAACATCATGGAATTAAAAGCCAAACCTGTTGTAGAACTTAGAGAACAAGTGCTTCCAGAACTAAAAGAATTAGTCAAGCAACAGAGATTGGATCAGCTTATTCAAGGAGCCCAGTTTGACAGGACCCCGGGGCGAGCACGCGGGAGAGATAAAATCTGGTATTGTAGGTTGTCACCGAATTTAAAATTTCTCCATTATGGCGACTGTCAAGAGGGCCAAGCGCCTCCTCTTGAAAATCTTCCAAACAAATTACCAATCGCCAAAATTAAAAACCTGCTGGTTGGAAAGGATTGTCCTCATAGTAAAGATCGGAAATTCAGCAAAGCGTATGTAACTTTATGTTTTTCTCTTATGTACGAAAGTGAGACAGAGGAGAAACATCTCGACTTTATCGCAGCAACCCCGGCAACGTTTGCCATTTGGACTGATGGCTTAGCAACTTTACTCAACAAAGAGATGCCGTCTTCGGAGTCACACGAAGAACTAGAAACCCTCCTCAATATGGAAATGAAACTCAGATTATTAGACTTGGAGAATATAACGATTCCTGCGACCCCGCCTCCAGTACCGGCAGAGCCCCCGAATTTTAACTTTGTCTATGACTTTAGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92556	Engulfment and cell motility protein 1 OS=Homo sapiens OX=9606 GN=ELMO1 PE=1 SV=2
Q8BPU7	Engulfment and cell motility protein 1 OS=Mus musculus OX=10090 GN=Elmo1 PE=1 SV=2
Q96JJ3	Engulfment and cell motility protein 2 OS=Homo sapiens OX=9606 GN=ELMO2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006019 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11841 all species →	ELMO_ARM	ELMO, armadillo-like helical domain	Repeat	Interproscan
PF16457 all species →	PH_12	Pleckstrin homology domain	Domain	Interproscan
PF04727 all species →	ELMO_CED12	ELMO/CED-12 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050868 all species →	Family	Engulfment and cell motility domain-containing protein	Interproscan
IPR024574 all species →	Domain	ELMO, armadillo-like helical domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR006816 all species →	Domain	ELMO domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12771 all species →	ENGULFMENT AND CELL MOTILITY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12366	ELMO1, CED12; engulfment and cell motility protein 1	-	Bacterial invasion of epithelial cells	ko05100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.