Gene detail

Detailed information of evm.model.Ap4.5298 in Astrangia poculata

Genomic Location: Ap4:37649208...37656007
NR annotation: XP_020601479.1, uncharacterized protein LOC110040573 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5298

atgcccgctccagttcatacaaaagcgggagtgtgcacgccatatcaagtcgcatttccaaagggttactgcaaagatattattggttatctaccagtctacggaacacatcaattcgagctgcatctcaacgagataaaactgttgctctttcagaaatttttagagcggtcacgagcgaattcaacagaagaaggctggcaaataataaccaacgacaaatcttttgttgtgcggcaaagctgtctggatatggtggatgatgtgtactgtcaccattattttaagcgctgctacatttcttccagaccacaagttatctgcagagaagcatgcgaggaattgttcttccaagtgtgtgatcgggaacacgaaatggttaaaacgttgaattttgacataatagactgcaccactctgccatttcgaaatcaatcgtccaactgctattatcctgacaagatacgagagaaacttaacgttctggatggtgaagactgcttctatggagatggacgtggctaccacggcaacagaagcgtcacagtttctgggtacacctgtcagtcgtggaatgcccaatgcccccataaacacaatatcaatggaaagatttacaaatcgtttgaagaaagtggcaatttatgtcgtaatccaggagggtacgctttgcatgggccgtggtgtttcaccacagataggaccgtacgatgggagtactgtgatgtgcctaaatgtgccgaacgaccgcccccaagcccaccaattaatttccgaggtcacaacatgagctcaacaagcataaaactcacttggggagatgttccaaaggcccttattcatggaatacttcttggattccacgtggcctgtgagagacctaacacgtcagacagtcattttgtggagttgtcacctgcagaacataattgggtgttcaaaggactccaaaaatatagaaattatagttgctggctcagagcgtacaacaactatggaactggtaattggagtgaagaattggtcctttcaacggatgaagatgtccccgatgctccacctaagagtctaaacgcctggaacttaagttctactagtcttcgtattcagtgggatccaatacctttcgagtatcggaatggaaaaatacttcaatataaagttgaaataaaagcagaagaacaaacgagagagcgacaaaaagttacaaagtacacacagtcgacatccctcatgctcaagggactccagaagtacagcaagtatgtgatcagtgtttctgggataacaagacgaggcaacggccctgctcgtttaaaagtggtgcaaacggacgaagacgttccagatcgccctccgcaggacataaccgcggttagcataggaacagatacagtacaagttgactggaatccagtcccaccagaatataccaatggacaggttcttgcatttacagccaagggaaatggcgctaatagcaaggcctactttgcaaagacttttccagacccacaagtgggctctaacatagaaacgggcacatcgtctgctgcaaaagtgggcataattgctgctgctgtattttttgtcattcttgcatttggagcagttttcctgttgatatacttcgtccgaaagaagaggattccatcaaattctaataatggaaatggtttaggttgttctgtaacaccttacgccgtttcctctcctgactggctaaatgaaatcatcagcactcataggcacggatacgagacgatagatgatgacaatgttgccaacataattcgccgaccacattacatcaatattgctgctgatggctcgctcaaccttccaccacacttaaagaatattgttaccgagtttgaactgctgtacgagaacacacgcttcaacaggctgcatcgtcatggcaggcggcgatcagttgaaggagcagtggatgggtttagaaaccccgtgtatgataagctgcaaagagctctttcttcaactgatccttgccaaggcaatagatgtacaataggtgtgcaagcaggtaccactgcaacgatggaacacaagaaaggctgctctgttgatctgggcgagctacgagggtttgttggagctcttcagggcaatacatgcagcattgagatgacagaaatgggaaccgtggaacaaagatgtcggcgccgtttctctgttgacatgggtcaggtaagagagtttattgctctcagagaaatgaagacctcgacaaaagaagagaaaacgtctctagctgaccaaccagatgcaaaggaagaaagtcgcaatgacaagacttgttaa

Transcript

evm.model.Ap4.5298

ATGCCCGCTCCAGTTCATACAAAAGCGGGAGTGTGCACGCCATATCAAGTCGCATTTCCAAAGGGTTACTGCAAAGATATTATTGGTTATCTACCAGTCTACGGAACACATCAATTCGAGCTGCATCTCAACGAGATAAAACTGTTGCTCTTTCAGAAATTTTTAGAGCGGTCACGAGCGAATTCAACAGAAGAAGGCTGGCAAATAATAACCAACGACAAATCTTTTGTTGTGCGGCAAAGCTGTCTGGATATGGTGGATGATGTGTACTGTCACCATTATTTTAAGCGCTGCTACATTTCTTCCAGACCACAAGTTATCTGCAGAGAAGCATGCGAGGAATTGTTCTTCCAAGTGTGTGATCGGGAACACGAAATGGTTAAAACGTTGAATTTTGACATAATAGACTGCACCACTCTGCCATTTCGAAATCAATCGTCCAACTGCTATTATCCTGACAAGATACGAGAGAAACTTAACGTTCTGGATGGTGAAGACTGCTTCTATGGAGATGGACGTGGCTACCACGGCAACAGAAGCGTCACAGTTTCTGGGTACACCTGTCAGTCGTGGAATGCCCAATGCCCCCATAAACACAATATCAATGGAAAGATTTACAAATCGTTTGAAGAAAGTGGCAATTTATGTCGTAATCCAGGAGGGTACGCTTTGCATGGGCCGTGGTGTTTCACCACAGATAGGACCGTACGATGGGAGTACTGTGATGTGCCTAAATGTGCCGAACGACCGCCCCCAAGCCCACCAATTAATTTCCGAGGTCACAACATGAGCTCAACAAGCATAAAACTCACTTGGGGAGATGTTCCAAAGGCCCTTATTCATGGAATACTTCTTGGATTCCACGTGGCCTGTGAGAGACCTAACACGTCAGACAGTCATTTTGTGGAGTTGTCACCTGCAGAACATAATTGGGTGTTCAAAGGACTCCAAAAATATAGAAATTATAGTTGCTGGCTCAGAGCGTACAACAACTATGGAACTGGTAATTGGAGTGAAGAATTGGTCCTTTCAACGGATGAAGATGTCCCCGATGCTCCACCTAAGAGTCTAAACGCCTGGAACTTAAGTTCTACTAGTCTTCGTATTCAGTGGGATCCAATACCTTTCGAGTATCGGAATGGAAAAATACTTCAATATAAAGTTGAAATAAAAGCAGAAGAACAAACGAGAGAGCGACAAAAAGTTACAAAGTACACACAGTCGACATCCCTCATGCTCAAGGGACTCCAGAAGTACAGCAAGTATGTGATCAGTGTTTCTGGGATAACAAGACGAGGCAACGGCCCTGCTCGTTTAAAAGTGGTGCAAACGGACGAAGACGTTCCAGATCGCCCTCCGCAGGACATAACCGCGGTTAGCATAGGAACAGATACAGTACAAGTTGACTGGAATCCAGTCCCACCAGAATATACCAATGGACAGGTTCTTGCATTTACAGCCAAGGGAAATGGCGCTAATAGCAAGGCCTACTTTGCAAAGACTTTTCCAGACCCACAAGTGGGCTCTAACATAGAAACGGGCACATCGTCTGCTGCAAAAGTGGGCATAATTGCTGCTGCTGTATTTTTTGTCATTCTTGCATTTGGAGCAGTTTTCCTGTTGATATACTTCGTCCGAAAGAAGAGGATTCCATCAAATTCTAATAATGGAAATGGTTTAGGTTGTTCTGTAACACCTTACGCCGTTTCCTCTCCTGACTGGCTAAATGAAATCATCAGCACTCATAGGCACGGATACGAGACGATAGATGATGACAATGTTGCCAACATAATTCGCCGACCACATTACATCAATATTGCTGCTGATGGCTCGCTCAACCTTCCACCACACTTAAAGAATATTGTTACCGAGTTTGAACTGCTGTACGAGAACACACGCTTCAACAGGCTGCATCGTCATGGCAGGCGGCGATCAGTTGAAGGAGCAGTGGATGGGTTTAGAAACCCCGTGTATGATAAGCTGCAAAGAGCTCTTTCTTCAACTGATCCTTGCCAAGGCAATAGATGTACAATAGGTGTGCAAGCAGGTACCACTGCAACGATGGAACACAAGAAAGGCTGCTCTGTTGATCTGGGCGAGCTACGAGGGTTTGTTGGAGCTCTTCAGGGCAATACATGCAGCATTGAGATGACAGAAATGGGAACCGTGGAACAAAGATGTCGGCGCCGTTTCTCTGTTGACATGGGTCAGGTAAGAGAGTTTATTGCTCTCAGAGAAATGAAGACCTCGACAAAAGAAGAGAAAACGTCTCTAGCTGACCAACCAGATGCAAAGGAAGAAAGTCGCAATGACAAGACTTGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01974	Tyrosine-protein kinase transmembrane receptor ROR2 OS=Homo sapiens OX=9606 GN=ROR2 PE=1 SV=2
Q9Z138	Tyrosine-protein kinase transmembrane receptor ROR2 OS=Mus musculus OX=10090 GN=Ror2 PE=1 SV=2
P20918	Plasminogen OS=Mus musculus OX=10090 GN=Plg PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000396 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00051 all species →	Kringle	Kringle domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000001 all species →	Domain	Kringle	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR038178 all species →	Homologous_superfamily	Kringle superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050379 all species →	Family	Type I Cytokine Receptor	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004896 all species →	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221 all species →	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955 all species →	Molecular Function	cytokine binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.5298.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.