Gene detail

Detailed information of evm.model.Ap4.5343 in Astrangia poculata

Genomic Location: Ap4:38176722...38194126
NR annotation: XP_052699542.1, uncharacterized protein LOC128177059 [Crassostrea angulata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5343

atgatagatttattcttcaagttggacgaaaatgaagacgggaatgttaaaatgggggagctcgggagagttttgaagaaatctggaaagacgctgtcaaccgacgaccttaaaactatgatcacagcaatggacggcaatggggatggaaaagtgaaccttctggaatttgaagattaccggtacagccaaatcaaagacgcaattactgagtacgatctaaagcaccattttaagacgcttgaccttaataaagatggattcatcgtgagctatgaattaggactggtaaagaaggtgtttgatgaaaagaactacacaaaaaaagacatcgatgaaatggtcgctaaagttgatgtgaattctgatggaaacgtcacttttcaagagtttatcccgatggtcaagccaaaatgggggcgattgaccaacgcccagttaaaagtaatagaaaagtacttcaagaggtttgacgaaaatggtgatgggaatattacacatggagagctcgaaagtgttataaagaaatttggaaagatgctgtcggccgatgaccttaaaactatgatcaaagcaatggacggcaatgggaatggaatagttaactactttgaattggaagactacatggcctctgttatgaaaaacccagttactgaggaagtcgacttaatgctgcacttcaacgaccatgaccttaatggtgatggctttgtcacgagctatgatttggacatcataatgaaaactttttttaaagcgaacttcacaaagaaagaaattgatgacatggtcgctgaggcagacgtaaatcttgatggaaaaggcacttataaagagtttgtccagacggtcgtggaactgaaaaaagagctgaaatatataaaagatttcttcaagaagtttgacgaaaatggcgatggaaatattacaacgggggagatcggaagagttttgaaaaaaactgggaagatactgtcagctgatgagcttaacactattatcacaaagctggatgacaatggggatggaaaagtggactttgatgaatttgaatactacgtgtccagtcaatacaaagaaaacccagttactgatgccgcagtagagaaagacttcaaatcgtatgaccttaatggcgatggcttcattataagatctgaactggccctggtaaggaaggtgttttttgaagaaaatgacacaaaggaagaaatcgatggcatgctcgccgagggtgatatgaattctgatgggaaaggcaccttaaaagtaatcgaaaaaaccttcaagaagtttgacgaagatggggataggaatattacgatggaggagctcggaagagttttgaagaaatctgggaagatgctctcaaccgacgacctcgaaacgatgatcagagtaatatgcggccatgatcatggaaaagtggacttttttgaatttgaagattacatggccattctactgaaaaacccagttactgagagagagataaagcactacttcgatgcgtatgaccttaacggcgacggcgccattataagctatgaattgggtctggtactgaaagtgttcagtaaaaacaactttacaaaggaagtactcgagaagattctcgctgagatagaagtgaattttgatgggaaaatcgtttataaagaaatggaaattactgtaaatcacctgaatcaacaggctgatgaaataaaagaatccttcgacgagtttgatgaagattgggatgagaaaattacattgaaggagctggaaaaaggattgaaaaaatctggaaagatggtgtcagctgacgagctaaacactgtgatcacagcaatggacaaagatggggatggaaacatagatttagctgaatttcaaaagtaccgggacagtcaaataaaagtcaaaagtactgaaaaagacatgaaggaatacttcaaaacttttgaccttaatggcgatggcattatcaaaatttgtgaactgtccctggtaatgaaggtttttggttacaagaaatacacaaagaaagagatacatgacatgttcgatgaggctgatgtgaattatgatggaagagctacttatgaagagattgtctcgatgctcaagaaatggagagatcagtatgaagaaatagcgaggtccttcgctaggcttgacgaaaattggaatggcataattacaatggaggagctcgaaagtgtaatgaagaaatctgggaaggcgctgtcaaccaacgagcttaaaactgtaatcacagcaatggacataaatggaaatggaaaagtggagtttcatgaattttataattaccggtccagtcaaatcaaactgccgaatactgatgacgacatcgagaaacacttcaaaacgtatgacctcaatggcgatggattcatcataagatctgaactggccctggttaagaatgtgattgataaagagaacttcacaaaaaaagaaatcgatgacatattcgatgaggtcgattcaaactcagatgaaaaagccacttctcaagagtttgccaagatgatcaataaacaagaacagattggagaaataagagaaaccttctatacgtttgacgaaaattttgatgggaatattacactggaggagctcaaaagcgctatgaataaatctggaaagacgctgtcagccgacgatcttaagactgttgtcacagcaatggacgacaatggggatagagttgtgaactattctgaatttgaacagttcaggtacagtgaaatcaaacacccatttactgacgaggacgatataaagcacaacttcaaagtgcttgacctaaatggcgacggtttcatctctaacgatgaactggctcttgtagctaaggtgttttatgatgggcacttcccagaggacgacatcgatgccttgatcggtgaagctgatctcaactgtgatggaagagccacttatccaggtatgagcgagcaggtgaagtag

Transcript

evm.model.Ap4.5343

ATGATAGATTTATTCTTCAAGTTGGACGAAAATGAAGACGGGAATGTTAAAATGGGGGAGCTCGGGAGAGTTTTGAAGAAATCTGGAAAGACGCTGTCAACCGACGACCTTAAAACTATGATCACAGCAATGGACGGCAATGGGGATGGAAAAGTGAACCTTCTGGAATTTGAAGATTACCGGTACAGCCAAATCAAAGACGCAATTACTGAGTACGATCTAAAGCACCATTTTAAGACGCTTGACCTTAATAAAGATGGATTCATCGTGAGCTATGAATTAGGACTGGTAAAGAAGGTGTTTGATGAAAAGAACTACACAAAAAAAGACATCGATGAAATGGTCGCTAAAGTTGATGTGAATTCTGATGGAAACGTCACTTTTCAAGAGTTTATCCCGATGGTCAAGCCAAAATGGGGGCGATTGACCAACGCCCAGTTAAAAGTAATAGAAAAGTACTTCAAGAGGTTTGACGAAAATGGTGATGGGAATATTACACATGGAGAGCTCGAAAGTGTTATAAAGAAATTTGGAAAGATGCTGTCGGCCGATGACCTTAAAACTATGATCAAAGCAATGGACGGCAATGGGAATGGAATAGTTAACTACTTTGAATTGGAAGACTACATGGCCTCTGTTATGAAAAACCCAGTTACTGAGGAAGTCGACTTAATGCTGCACTTCAACGACCATGACCTTAATGGTGATGGCTTTGTCACGAGCTATGATTTGGACATCATAATGAAAACTTTTTTTAAAGCGAACTTCACAAAGAAAGAAATTGATGACATGGTCGCTGAGGCAGACGTAAATCTTGATGGAAAAGGCACTTATAAAGAGTTTGTCCAGACGGTCGTGGAACTGAAAAAAGAGCTGAAATATATAAAAGATTTCTTCAAGAAGTTTGACGAAAATGGCGATGGAAATATTACAACGGGGGAGATCGGAAGAGTTTTGAAAAAAACTGGGAAGATACTGTCAGCTGATGAGCTTAACACTATTATCACAAAGCTGGATGACAATGGGGATGGAAAAGTGGACTTTGATGAATTTGAATACTACGTGTCCAGTCAATACAAAGAAAACCCAGTTACTGATGCCGCAGTAGAGAAAGACTTCAAATCGTATGACCTTAATGGCGATGGCTTCATTATAAGATCTGAACTGGCCCTGGTAAGGAAGGTGTTTTTTGAAGAAAATGACACAAAGGAAGAAATCGATGGCATGCTCGCCGAGGGTGATATGAATTCTGATGGGAAAGGCACCTTAAAAGTAATCGAAAAAACCTTCAAGAAGTTTGACGAAGATGGGGATAGGAATATTACGATGGAGGAGCTCGGAAGAGTTTTGAAGAAATCTGGGAAGATGCTCTCAACCGACGACCTCGAAACGATGATCAGAGTAATATGCGGCCATGATCATGGAAAAGTGGACTTTTTTGAATTTGAAGATTACATGGCCATTCTACTGAAAAACCCAGTTACTGAGAGAGAGATAAAGCACTACTTCGATGCGTATGACCTTAACGGCGACGGCGCCATTATAAGCTATGAATTGGGTCTGGTACTGAAAGTGTTCAGTAAAAACAACTTTACAAAGGAAGTACTCGAGAAGATTCTCGCTGAGATAGAAGTGAATTTTGATGGGAAAATCGTTTATAAAGAAATGGAAATTACTGTAAATCACCTGAATCAACAGGCTGATGAAATAAAAGAATCCTTCGACGAGTTTGATGAAGATTGGGATGAGAAAATTACATTGAAGGAGCTGGAAAAAGGATTGAAAAAATCTGGAAAGATGGTGTCAGCTGACGAGCTAAACACTGTGATCACAGCAATGGACAAAGATGGGGATGGAAACATAGATTTAGCTGAATTTCAAAAGTACCGGGACAGTCAAATAAAAGTCAAAAGTACTGAAAAAGACATGAAGGAATACTTCAAAACTTTTGACCTTAATGGCGATGGCATTATCAAAATTTGTGAACTGTCCCTGGTAATGAAGGTTTTTGGTTACAAGAAATACACAAAGAAAGAGATACATGACATGTTCGATGAGGCTGATGTGAATTATGATGGAAGAGCTACTTATGAAGAGATTGTCTCGATGCTCAAGAAATGGAGAGATCAGTATGAAGAAATAGCGAGGTCCTTCGCTAGGCTTGACGAAAATTGGAATGGCATAATTACAATGGAGGAGCTCGAAAGTGTAATGAAGAAATCTGGGAAGGCGCTGTCAACCAACGAGCTTAAAACTGTAATCACAGCAATGGACATAAATGGAAATGGAAAAGTGGAGTTTCATGAATTTTATAATTACCGGTCCAGTCAAATCAAACTGCCGAATACTGATGACGACATCGAGAAACACTTCAAAACGTATGACCTCAATGGCGATGGATTCATCATAAGATCTGAACTGGCCCTGGTTAAGAATGTGATTGATAAAGAGAACTTCACAAAAAAAGAAATCGATGACATATTCGATGAGGTCGATTCAAACTCAGATGAAAAAGCCACTTCTCAAGAGTTTGCCAAGATGATCAATAAACAAGAACAGATTGGAGAAATAAGAGAAACCTTCTATACGTTTGACGAAAATTTTGATGGGAATATTACACTGGAGGAGCTCAAAAGCGCTATGAATAAATCTGGAAAGACGCTGTCAGCCGACGATCTTAAGACTGTTGTCACAGCAATGGACGACAATGGGGATAGAGTTGTGAACTATTCTGAATTTGAACAGTTCAGGTACAGTGAAATCAAACACCCATTTACTGACGAGGACGATATAAAGCACAACTTCAAAGTGCTTGACCTAAATGGCGACGGTTTCATCTCTAACGATGAACTGGCTCTTGTAGCTAAGGTGTTTTATGATGGGCACTTCCCAGAGGACGACATCGATGCCTTGATCGGTGAAGCTGATCTCAACTGTGATGGAAGAGCCACTTATCCAGGTATGAGCGAGCAGGTGAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09485	Calcium-binding protein LPS1-alpha OS=Lytechinus pictus OX=7653 PE=2 SV=2
Q40302	Calmodulin OS=Macrocystis pyrifera OX=35122 PE=2 SV=3
P04464	Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0040253 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.5343.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.