Detailed information of evm.model.Ap4.5360 in Astrangia poculata

Genomic Location: Ap4:38416920...38417366
NR annotation: XP_022794821.1, lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8QGW7Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Gallus gallus OX=9031 GN=LITAF PE=2 SV=1
Q6P828Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Xenopus tropicalis OX=8364 GN=litaf PE=2 SV=1
Q54HX8Cell death-inducing p53-target protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=litaf PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000706 (this species only)
Transcription factor familyzf-LITAF-like · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10601
all species →		zf-LITAF-likeLITAF-like zinc ribbon domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006629
all species →		DomainLPS-induced tumour necrosis factor alpha factorInterproscan
IPR037519
all species →		FamilyLITAF domain containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23292
all species →		LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19363LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor-Lysosomeko04142deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP