Gene detail

Detailed information of evm.model.Ap4.558 in Astrangia poculata

Genomic Location: Ap4:5812842...5830800
NR annotation: CAH3117715.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.558

atggcgaccaactcggagagacagattaatgaaaccatgaccgacagcttattgctggatatcctgaccccaggatatctacctgacatcacggcacttcagatgcctgcagccacttatacaggtccttacatggaaatccttgagcagcctaaacagaggggttttcgttttcgctacccatgtgaggggccgtctcatggtggtttacccggtcagtattctgagaagggcaagaagtcatacccttccgtccagctctgcaactatcaaggccccgcccgtattgttgtgtcgttagtaacagttgatgagcctcccatgccccatgcgcacagtctgattggcaagaattctaacaatggagtggtgacggtacagattggtcctgaacatggaatgactgcgagtttcccaaatctcggcattcaacatgtgacaaagaaacttgtggcaaaagtgttgatggaacgatacgtaaaaatgcagtccctccacacagccaccctaaatgcactgaatgcagcagatggcaaggcctttgatgtgggaatgttgggtgatcaggcattagcagatggtgaaagagccacttttgataaaaacatggctgaggctgtggcggaggaggaatcacgaaaggttcgccgcatggtcgaggaacagacacagaacatgaacttgaatgccgtcagattgtgctttcaagcatatcttcctgatgacagtggctgttttacaaaagccttacctccttgtgtctcaaatccagtttatgattcaaaagccccatgtgcctcaaatcttaagatttgccgcatggatcgcaactctggctgtgccacagggggtgatgaggtctacttgttgtgtgacaaagtacaaaaagatgacattgaagttgtgttttatgagactaatgtggagactgccaaaaaaacctgggaggggcaaggagtgtttgctccaacagatgtccacagacaggtcgccatagtttttaaaactcctccatactggaatcttgccattgaaagacctgctaaagtgcagcttgaactgcgacgcaaatctgaccaagagacaagtgaaccagtggagtttacttatcagccacaaatgtttgacaaagaacagattggtgctaaaagacgaaagaaaatccctcatttttctgactactttggtggtggaggtggaggtggcccccctcccagtgcaggtggggctggtggtgggggttttggtggttttggtgcattgggcctactgggccctgctgcatttggtttcataccctttagtactaacccaggtacttctcaaactaacaatcaaggaggtgggagcacatctcaacagggacagtcacatgcttctgggcagacacacacagctggacagtcgtcccaagcagatcttagcgaattagcatggaatcttgccgagaagtctgctgccgccatgcgtgactatgctgctactggtgacatgcggtatttacttgcagctcagagacacttgacagcagtacaagacgacagcggcgacactgctcttcaccttgctgtcatcaactcccaacaagaagtagttcagtgtctaattgacgtcatggctgggctgccagattcttacatcagcgaatataacttcttgagacaatcgcctcttcacctcgctgccatcactaagcaaccccgcatactggaatgtctgttaagagcaagtgcaaatgccagatcccgtgatcgtcatggaaacacagctgtgcacattgcatgtatgcatggtgatgctgtctgtttgaaagcgctgttgaactttaatgtgtcgaaaacagttctcaactggcagaactaccaaggtctgactccagtgcatctagcagtcctagccggtagtaaagatgttcttaaactgttgaactcagcaggagctaacatgagcgctcaggacggcacaagtggtaaaactccccttcatcacgcagttgaacaagatcatctggctgtggctggctttctcattctggaggcaaacagtgatgtagatgcggccaccttcgatggcaacacaccgctgcacatagctgcagccagtgggctcaaaggacagacagcattgcttgtggctgctggagctgataccacattacagaacagtgatgaagaaacagcttttgacttggctaacgtagctgaagttcaagaaatcttggatgaagacgaagcgctaagcactgacccttcgcaagatgacgaactagcagcaggcttgactggtctcacattgggccaaggtgacatggacaagttagatccttattcaccacgagtgttagctcaatatgaggctgctgatggtagtatcaagacattgcggcaggtccttcatgacatgcgcagaggggatgtgttagaaatccttgaggaacgcaatgattcaggatttgattccggtctcggctctcactctctatcggccagcagatcaatagaaatggcgtcctatgaggccgggagctctaatatttcgtctagttcttcaatacaaaagggaacgacaagcctcgagtccacacgaaaggctggaaactttcaaccgctcagacaacaccaagatgtattttaa

Transcript

evm.model.Ap4.558

ATGGCGACCAACTCGGAGAGACAGATTAATGAAACCATGACCGACAGCTTATTGCTGGATATCCTGACCCCAGGATATCTACCTGACATCACGGCACTTCAGATGCCTGCAGCCACTTATACAGGTCCTTACATGGAAATCCTTGAGCAGCCTAAACAGAGGGGTTTTCGTTTTCGCTACCCATGTGAGGGGCCGTCTCATGGTGGTTTACCCGGTCAGTATTCTGAGAAGGGCAAGAAGTCATACCCTTCCGTCCAGCTCTGCAACTATCAAGGCCCCGCCCGTATTGTTGTGTCGTTAGTAACAGTTGATGAGCCTCCCATGCCCCATGCGCACAGTCTGATTGGCAAGAATTCTAACAATGGAGTGGTGACGGTACAGATTGGTCCTGAACATGGAATGACTGCGAGTTTCCCAAATCTCGGCATTCAACATGTGACAAAGAAACTTGTGGCAAAAGTGTTGATGGAACGATACGTAAAAATGCAGTCCCTCCACACAGCCACCCTAAATGCACTGAATGCAGCAGATGGCAAGGCCTTTGATGTGGGAATGTTGGGTGATCAGGCATTAGCAGATGGTGAAAGAGCCACTTTTGATAAAAACATGGCTGAGGCTGTGGCGGAGGAGGAATCACGAAAGGTTCGCCGCATGGTCGAGGAACAGACACAGAACATGAACTTGAATGCCGTCAGATTGTGCTTTCAAGCATATCTTCCTGATGACAGTGGCTGTTTTACAAAAGCCTTACCTCCTTGTGTCTCAAATCCAGTTTATGATTCAAAAGCCCCATGTGCCTCAAATCTTAAGATTTGCCGCATGGATCGCAACTCTGGCTGTGCCACAGGGGGTGATGAGGTCTACTTGTTGTGTGACAAAGTACAAAAAGATGACATTGAAGTTGTGTTTTATGAGACTAATGTGGAGACTGCCAAAAAAACCTGGGAGGGGCAAGGAGTGTTTGCTCCAACAGATGTCCACAGACAGGTCGCCATAGTTTTTAAAACTCCTCCATACTGGAATCTTGCCATTGAAAGACCTGCTAAAGTGCAGCTTGAACTGCGACGCAAATCTGACCAAGAGACAAGTGAACCAGTGGAGTTTACTTATCAGCCACAAATGTTTGACAAAGAACAGATTGGTGCTAAAAGACGAAAGAAAATCCCTCATTTTTCTGACTACTTTGGTGGTGGAGGTGGAGGTGGCCCCCCTCCCAGTGCAGGTGGGGCTGGTGGTGGGGGTTTTGGTGGTTTTGGTGCATTGGGCCTACTGGGCCCTGCTGCATTTGGTTTCATACCCTTTAGTACTAACCCAGGTACTTCTCAAACTAACAATCAAGGAGGTGGGAGCACATCTCAACAGGGACAGTCACATGCTTCTGGGCAGACACACACAGCTGGACAGTCGTCCCAAGCAGATCTTAGCGAATTAGCATGGAATCTTGCCGAGAAGTCTGCTGCCGCCATGCGTGACTATGCTGCTACTGGTGACATGCGGTATTTACTTGCAGCTCAGAGACACTTGACAGCAGTACAAGACGACAGCGGCGACACTGCTCTTCACCTTGCTGTCATCAACTCCCAACAAGAAGTAGTTCAGTGTCTAATTGACGTCATGGCTGGGCTGCCAGATTCTTACATCAGCGAATATAACTTCTTGAGACAATCGCCTCTTCACCTCGCTGCCATCACTAAGCAACCCCGCATACTGGAATGTCTGTTAAGAGCAAGTGCAAATGCCAGATCCCGTGATCGTCATGGAAACACAGCTGTGCACATTGCATGTATGCATGGTGATGCTGTCTGTTTGAAAGCGCTGTTGAACTTTAATGTGTCGAAAACAGTTCTCAACTGGCAGAACTACCAAGGTCTGACTCCAGTGCATCTAGCAGTCCTAGCCGGTAGTAAAGATGTTCTTAAACTGTTGAACTCAGCAGGAGCTAACATGAGCGCTCAGGACGGCACAAGTGGTAAAACTCCCCTTCATCACGCAGTTGAACAAGATCATCTGGCTGTGGCTGGCTTTCTCATTCTGGAGGCAAACAGTGATGTAGATGCGGCCACCTTCGATGGCAACACACCGCTGCACATAGCTGCAGCCAGTGGGCTCAAAGGACAGACAGCATTGCTTGTGGCTGCTGGAGCTGATACCACATTACAGAACAGTGATGAAGAAACAGCTTTTGACTTGGCTAACGTAGCTGAAGTTCAAGAAATCTTGGATGAAGACGAAGCGCTAAGCACTGACCCTTCGCAAGATGACGAACTAGCAGCAGGCTTGACTGGTCTCACATTGGGCCAAGGTGACATGGACAAGTTAGATCCTTATTCACCACGAGTGTTAGCTCAATATGAGGCTGCTGATGGTAGTATCAAGACATTGCGGCAGGTCCTTCATGACATGCGCAGAGGGGATGTGTTAGAAATCCTTGAGGAACGCAATGATTCAGGATTTGATTCCGGTCTCGGCTCTCACTCTCTATCGGCCAGCAGATCAATAGAAATGGCGTCCTATGAGGCCGGGAGCTCTAATATTTCGTCTAGTTCTTCAATACAAAAGGGAACGACAAGCCTCGAGTCCACACGAAAGGCTGGAAACTTTCAACCGCTCAGACAACACCAAGATGTATTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04861	Nuclear factor NF-kappa-B p105 subunit OS=Gallus gallus OX=9031 GN=NFKB1 PE=2 SV=2
P19838	Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 PE=1 SV=2
P25799	Nuclear factor NF-kappa-B p105 subunit OS=Mus musculus OX=10090 GN=Nfkb1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000740 (this species only)
Transcription factor family	RHD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16179 all species →	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00554 all species →	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032397 all species →	Domain	Rel homology dimerisation domain	Interproscan
IPR037059 all species →	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR030492 all species →	Conserved_site	Rel homology domain, conserved site	Interproscan
IPR000451 all species →	Family	NF-kappa-B/Dorsal	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011539 all species →	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR033926 all species →	Domain	NFkappaB IPT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24169 all species →	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02580	NFKB1; nuclear factor NF-kappa-B p105 subunit	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.