Genomic Location: Ap4:40635714...40639461
NR annotation: XP_020631259.1, selenocysteine lyase-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.5595 |
| Transcript |
| evm.model.Ap4.5595 |
| Protein |
| evm.model.Ap4.5595 |
| UniProt accession | Description |
|---|---|
| A2VDS1 | Selenocysteine lyase OS=Bos taurus OX=9913 GN=SCLY PE=2 SV=1 |
| Q68FT9 | Selenocysteine lyase OS=Rattus norvegicus OX=10116 GN=Scly PE=1 SV=1 |
| Q5U4Q9 | Selenocysteine lyase OS=Xenopus tropicalis OX=8364 GN=scly PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001536 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00266 all species → | Aminotran_5 | Aminotransferase class-V | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR000192 all species → | Domain | Aminotransferase class V domain | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR016454 all species → | Family | Cysteine desulfurase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11601 all species → | CYSTEINE DESULFURYLASE FAMILY MEMBER | Interproscan |
evm.model.Ap4.5595 in Astrangia poculata.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01763 | SCLY; selenocysteine lyase | EC:4.4.1.16 | Selenocompound metabolism | ko00450 | deepkoala |
Transcript abundance of evm.model.Ap4.5595 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
