Genomic Location: Ap4:40868100...40874889
NR annotation: XP_020631267.1, saccharopine dehydrogenase [NAD(+), L-lysine-forming]-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.5614 |
| Transcript |
| evm.model.Ap4.5614 |
| Protein |
| evm.model.Ap4.5614 |
| UniProt accession | Description |
|---|---|
| Q09694 | Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lys3 PE=1 SV=2 |
| P38997 | Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=LYS5 PE=3 SV=1 |
| Q870G1 | Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=lysA PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001866 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05222 all species → | AlaDh_PNT_N | Alanine dehydrogenase/PNT, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007886 all species → | Domain | Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal | Interproscan |
| IPR027281 all species → | Family | Saccharopine dehydrogenase [NAD(+), L-lysine-forming] | Interproscan |
| IPR051168 all species → | Family | Alpha-aminoadipic semialdehyde synthase | Interproscan |
| IPR007698 all species → | Domain | Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11133 all species → | SACCHAROPINE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004754 all species → | Molecular Function | saccharopine dehydrogenase (NAD+, L-lysine-forming) activity | Interproscan |
| GO:0009085 all species → | Biological Process | lysine biosynthetic process | Interproscan |
| GO:0004753 all species → | Molecular Function | saccharopine dehydrogenase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0019878 all species → | Biological Process | lysine biosynthetic process via aminoadipic acid | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00290 | LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) | EC:1.5.1.7 | Lysine degradation | ko00310 | deepkoala |
Transcript abundance of evm.model.Ap4.5614 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
