Detailed information of evm.model.Ap4.5650 in Astrangia poculata

Genomic Location: Ap4:41231809...41261747
NR annotation: XP_020622093.1, protocadherin-like protein [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8V7Q1Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q8TDW7Protocadherin Fat 3 OS=Homo sapiens OX=9606 GN=FAT3 PE=1 SV=3
O15943Neural-cadherin OS=Drosophila melanogaster OX=7227 GN=CadN PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000983 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028
all species →		CadherinCadherin domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF01049
all species →		CADH_Y-type_LIRCadherin, Y-type LIR-motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR050971
all species →		FamilyCadherin domain-containing proteinInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR027397
all species →		Homologous_superfamilyCatenin binding domain superfamilyInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000233
all species →		DomainCadherin, Y-type LIR-motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24025
all species →		DESMOGLEIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0005911
all species →		Cellular Componentcell-cell junctionInterproscan
GO:0098609
all species →		Biological Processcell-cell adhesionInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.5650.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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