Detailed information of evm.model.Ap4.5656 in Astrangia poculata

Genomic Location: Ap4:41320966...41325006
NR annotation: XP_019643005.1, PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase-like [Branchiostoma belcheri]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0C6T1Chromosome transmission fidelity protein 8 homolog OS=Rattus norvegicus OX=10116 GN=Chtf8 PE=3 SV=1
P0CG15Chromosome transmission fidelity protein 8 homolog OS=Mus musculus OX=10090 GN=Chtf8 PE=3 SV=1
P0CG13Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens OX=9606 GN=CHTF8 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008941 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05699
all species →		Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF09696
all species →		Ctf8Ctf8FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008906
all species →		DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052958
all species →		FamilyInterferon-induced PKR regulatorInterproscan
IPR018607
all species →		FamilyChromosome transmission fidelity protein 8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46289
all species →		52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0007064
all species →		Biological Processmitotic sister chromatid cohesionInterproscan
GO:0031390
all species →		Cellular ComponentCtf18 RFC-like complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.5656.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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