Genomic Location: Ap4:41453837...41461472
NR annotation: XP_020600767.1, uncharacterized protein LOC110039930 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.5668 |
| Transcript |
| evm.model.Ap4.5668 |
| Protein |
| evm.model.Ap4.5668 |
| UniProt accession | Description |
|---|---|
| Q8AXY6 | Muscle, skeletal receptor tyrosine protein kinase OS=Gallus gallus OX=9031 GN=MUSK PE=2 SV=1 |
| Q01177 | Plasminogen OS=Rattus norvegicus OX=10116 GN=Plg PE=2 SV=2 |
| Q16609 | Putative apolipoprotein(a)-like protein 2 OS=Homo sapiens OX=9606 GN=LPAL2 PE=5 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000396 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00051 all species → | Kringle | Kringle domain | Domain | Interproscan |
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000001 all species → | Domain | Kringle | Interproscan |
| IPR038178 all species → | Homologous_superfamily | Kringle superfamily | Interproscan |
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR036790 all species → | Homologous_superfamily | Frizzled cysteine-rich domain superfamily | Interproscan |
| IPR020067 all species → | Domain | Frizzled domain | Interproscan |
| IPR013806 all species → | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR050759 all species → | Family | Serine proteases and regulators with kringle domains | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24261 all species → | PLASMINOGEN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004175 all species → | Molecular Function | endopeptidase activity | Interproscan |
| GO:0005102 all species → | Molecular Function | signaling receptor binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
evm.model.Ap4.5668.Transcript abundance of evm.model.Ap4.5668 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
