Gene detail

Detailed information of evm.model.Ap4.5698 in Astrangia poculata

Genomic Location: Ap4:41784410...41785673
NR annotation: KAJ7384920.1, Cytochrome b-c1 complex subunit Rieske, mitochondrial [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1D8PJX3	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RIP1 PE=1 SV=1
Q9CR68	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus OX=10090 GN=Uqcrfs1 PE=1 SV=1
Q69BJ7	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus OX=9521 GN=UQCRFS1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00355 all species →	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036922 all species →	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan
IPR006317 all species →	Domain	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	Interproscan
IPR014349 all species →	Family	Rieske iron-sulphur protein	Interproscan
IPR005805 all species →	Domain	Rieske iron-sulphur protein, C-terminal	Interproscan
IPR017941 all species →	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10134 all species →	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0008121 all species →	Molecular Function	ubiquinol-cytochrome-c reductase activity	Interproscan
GO:0005750 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00411	UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	EC:7.1.1.8	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.