Gene detail

Detailed information of evm.model.Ap4.5842 in Astrangia poculata

Genomic Location: Ap4:43112655...43114925
NR annotation: KAJ7337090.1, hypothetical protein OS493_009942 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5842

atgaagtctcccgagatcatcgtaatggtcccattacttgtcttttcctgtgccatcctgcgaaactgcagggcagaatcagaattttgtttcgattcgatttgcgagtttacgttcgtcgtaagcgaaggccgctcgatgacattcacaactgaagatggcaggaagtcatacgacgtcaaactgttaaaaaacggcacactcaaattagtaccgaacctctatcatcgtaaaaaggtgccgaacatcacccttactccagacatggtgcacactgctgatggcagtgctcaaagaaatataattctcgtcaacggtcagtttcccggaccaacgctagaggtaatggagggcgcagaagtggccgtaaaggtcgtcaacgaactcctgaaagaaggactgacaattcattggcacggtattcacttgcgcaacaatgtttggatggacggagtaccttacgtcactcaatgtccgatacttcctcggcaaagcttcacttatcgcttcattgccaatccaccgggaacacattggtatcattctcacaacgaacttcaacgcattgatggccttttcggtgcattaatcgttcgtagatcgaaagagaagggcatgttgccccctcacttccccatggtgataaatgactggtttccactttcctctaccgaaatcgcattacttgatccctatagctataggaactcgcatagtggaaatgcggaatcgctttttctgtctccagttaaaacaggcgcttcgtttgacggggtggagctgagctccatggattactggtcgggtcttataaacggtcgtggtcgaaagggaaacaatacctctcccctcgcagttttcaatgttatccgagggaaaaagtaccgattgcacatcgtcatggcttcgggagagtttgcttaccgagtgtcgatcgacacgcatgagttaacggtcattgaaagtgacggcaatccagtggaacctacgaaattcgaatctgtgataatttaccctggagaaacgtatgtggttgagtttaaagctgatcagaatccaggacgatactggattcgcgcaacgacgctgcgagtgggaagtggcttcgaaaatcctctgcctgatggaatcgtttgggacgtaaaggcaattttaaattacgaggaagcgagcgacaagaaaagggatcccaatagcagcagaagaacttgcacttctgaaactccctgcaaagttctaaactgcccatggccagcctatcgccaggatctgtttcccaacacgcaatgtgtcgcattttcagagcttcgattagacagctccctttttgagggcgagatttcgcaaacgaacgaggaggtcgacctagaactctttttgaacttggcttttcccatcggatcttccataaacagtcacagaatggtaatgcctcgtgcaccgcttttccaagaaccttcgacgtggcaacttgttccttgcacgcaagactgcgcaaaaacgggatgccggtgctcgaacgtagtaagccttcctgccaacaaaaccatacagctcgttgtaatgtccgacatttttggaggttttcagaaaggcacagtccctggaaacaaatacaagaaacaccattctatgcaccttcacggttacagttttcgtgttttaaagaccgcctatcctattgtagatgacatcaccggtaagatacttggcggaaacaaggacattgtttgtaattggcatgaagataggacttgcagtcacccttactggatctccggaagtgctactgggctaaattatgacaacccacctctcaagaacaccttggtagttccagcaatgggttataccgtagttcgttttcgaacagacaatccaggctattgggtatttcaatgtcacgctatgttgcactttatggagggaatggcgttgatttttaacgtttcctacgaagatcatccgcccgtccctccaggatttcccacctgccaatcctttgactttggtcacgaggagtttgaaaaatacttggtggaaaatcagaaagacaaacagcgattcaaggattttggaaggcacaagtcacgggagaaggaaacgtcgatgcctgttttatcagctgtaactgttcgcttttgttcctccgatgaatgttactatttaatctttataagcgctatggcaatcatttcagcattaaccgtggtggtatggatggcgatgagaagagtgcagcgtggccataacgcttataaggcttattaa

Transcript

evm.model.Ap4.5842

ATGAAGTCTCCCGAGATCATCGTAATGGTCCCATTACTTGTCTTTTCCTGTGCCATCCTGCGAAACTGCAGGGCAGAATCAGAATTTTGTTTCGATTCGATTTGCGAGTTTACGTTCGTCGTAAGCGAAGGCCGCTCGATGACATTCACAACTGAAGATGGCAGGAAGTCATACGACGTCAAACTGTTAAAAAACGGCACACTCAAATTAGTACCGAACCTCTATCATCGTAAAAAGGTGCCGAACATCACCCTTACTCCAGACATGGTGCACACTGCTGATGGCAGTGCTCAAAGAAATATAATTCTCGTCAACGGTCAGTTTCCCGGACCAACGCTAGAGGTAATGGAGGGCGCAGAAGTGGCCGTAAAGGTCGTCAACGAACTCCTGAAAGAAGGACTGACAATTCATTGGCACGGTATTCACTTGCGCAACAATGTTTGGATGGACGGAGTACCTTACGTCACTCAATGTCCGATACTTCCTCGGCAAAGCTTCACTTATCGCTTCATTGCCAATCCACCGGGAACACATTGGTATCATTCTCACAACGAACTTCAACGCATTGATGGCCTTTTCGGTGCATTAATCGTTCGTAGATCGAAAGAGAAGGGCATGTTGCCCCCTCACTTCCCCATGGTGATAAATGACTGGTTTCCACTTTCCTCTACCGAAATCGCATTACTTGATCCCTATAGCTATAGGAACTCGCATAGTGGAAATGCGGAATCGCTTTTTCTGTCTCCAGTTAAAACAGGCGCTTCGTTTGACGGGGTGGAGCTGAGCTCCATGGATTACTGGTCGGGTCTTATAAACGGTCGTGGTCGAAAGGGAAACAATACCTCTCCCCTCGCAGTTTTCAATGTTATCCGAGGGAAAAAGTACCGATTGCACATCGTCATGGCTTCGGGAGAGTTTGCTTACCGAGTGTCGATCGACACGCATGAGTTAACGGTCATTGAAAGTGACGGCAATCCAGTGGAACCTACGAAATTCGAATCTGTGATAATTTACCCTGGAGAAACGTATGTGGTTGAGTTTAAAGCTGATCAGAATCCAGGACGATACTGGATTCGCGCAACGACGCTGCGAGTGGGAAGTGGCTTCGAAAATCCTCTGCCTGATGGAATCGTTTGGGACGTAAAGGCAATTTTAAATTACGAGGAAGCGAGCGACAAGAAAAGGGATCCCAATAGCAGCAGAAGAACTTGCACTTCTGAAACTCCCTGCAAAGTTCTAAACTGCCCATGGCCAGCCTATCGCCAGGATCTGTTTCCCAACACGCAATGTGTCGCATTTTCAGAGCTTCGATTAGACAGCTCCCTTTTTGAGGGCGAGATTTCGCAAACGAACGAGGAGGTCGACCTAGAACTCTTTTTGAACTTGGCTTTTCCCATCGGATCTTCCATAAACAGTCACAGAATGGTAATGCCTCGTGCACCGCTTTTCCAAGAACCTTCGACGTGGCAACTTGTTCCTTGCACGCAAGACTGCGCAAAAACGGGATGCCGGTGCTCGAACGTAGTAAGCCTTCCTGCCAACAAAACCATACAGCTCGTTGTAATGTCCGACATTTTTGGAGGTTTTCAGAAAGGCACAGTCCCTGGAAACAAATACAAGAAACACCATTCTATGCACCTTCACGGTTACAGTTTTCGTGTTTTAAAGACCGCCTATCCTATTGTAGATGACATCACCGGTAAGATACTTGGCGGAAACAAGGACATTGTTTGTAATTGGCATGAAGATAGGACTTGCAGTCACCCTTACTGGATCTCCGGAAGTGCTACTGGGCTAAATTATGACAACCCACCTCTCAAGAACACCTTGGTAGTTCCAGCAATGGGTTATACCGTAGTTCGTTTTCGAACAGACAATCCAGGCTATTGGGTATTTCAATGTCACGCTATGTTGCACTTTATGGAGGGAATGGCGTTGATTTTTAACGTTTCCTACGAAGATCATCCGCCCGTCCCTCCAGGATTTCCCACCTGCCAATCCTTTGACTTTGGTCACGAGGAGTTTGAAAAATACTTGGTGGAAAATCAGAAAGACAAACAGCGATTCAAGGATTTTGGAAGGCACAAGTCACGGGAGAAGGAAACGTCGATGCCTGTTTTATCAGCTGTAACTGTTCGCTTTTGTTCCTCCGATGAATGTTACTATTTAATCTTTATAAGCGCTATGGCAATCATTTCAGCATTAACCGTGGTGGTATGGATGGCGATGAGAAGAGTGCAGCGTGGCCATAACGCTTATAAGGCTTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LPL3	L-ascorbate oxidase OS=Arabidopsis thaliana OX=3702 GN=AAO PE=1 SV=1
S8FIE4	Laccase-1 OS=Fomitopsis schrenkii OX=2126942 GN=LCC1 PE=1 SV=1
Q2RBK2	Putative laccase-17 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC17 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000747 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07732 all species →	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan
PF00394 all species →	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF07731 all species →	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008972 all species →	Homologous_superfamily	Cupredoxin	Interproscan
IPR011707 all species →	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR033138 all species →	Conserved_site	Multicopper oxidases, conserved site	Interproscan
IPR045087 all species →	Family	Multicopper oxidase	Interproscan
IPR001117 all species →	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR011706 all species →	Domain	Multicopper oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11709 all species →	MULTI-COPPER OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.5842.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.