Gene detail

Detailed information of evm.model.Ap4.5863 in Astrangia poculata

Genomic Location: Ap4:43307427...43325350
NR annotation: XP_027056761.1, ankyrin repeat and SAM domain-containing protein 6-like isoform X1 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5863

atggatccccaaacaagtagactattgctgagcgctgaacagggaaacttgtctatggtttcagcgctcttagacaaaaatatccatgtcgattcgacggacgaagaaggggttaatgccctgcatactgccgcgtcgaatggcaatgaaaaagttgtaagtttgttattgtctaaaggtgcaagtttggaagcgaggacaatctacggttggacggcgctaatgctggctgcttattacggtcatttcatggtctgttggattttaatacaacacaaagctgatatactcgctcgaaacgagctaggttcgacggctttagattgtgcggcacgcagcggtcacgtacagatcgccgctctcttgatcgaatcatcgcaggtgaattcggaggacgacacttcgcaattatgtctcgatactccgctaatgaacgcggctcaacatggccacgaagcggccttaaaattgcttcttgaaaagggggcagatgttaattatagacaagaaacaacggggtggacagcgcttatgttagcagccctaaatgggcacatgaccgcagcgcaaatcttggtagagttcggcgcggacacgaacgctctaaacgatatagatcagactgcactcgaaatcgctgttatacggcaaaagactgaagtgcaaggatttctcgacgtaagaacttctgcaagaccgcaaattaaaggtcagaagtctgtaagaccaagtatcatccaagctgcaaggagtggtaacttagcatctgtcaaagatttactggacgagggggaagttgacattaatgccagagatgacaatggtgcaactccattaatgtatgctgctatggttggacactctgcaatagtacagttactaatacaaaacggcgcagatgttgacaaacaagacaaggccagtggttggacagcattgatgcaggcaacttactatggacataaagctgttgttaagttgctgattgactcaggagctaatgtcagcattcaggaaaagaatggttgtacagcttttgatatggccactatcactggtaatacagaaatcttgcgttcattagcttcagtgagtatgcaggttccagccactcctaagagctactacagttcttcaagtttgcaagttgacaagggaaaggttgatgttaagagccctaaaagtatcttaaagaaagatatttcaagaatagatagtgatactggaaggaagaactggtggtctaaaatgtcaagcagattccggaacctcaatgttggccgcactctcagagtggcatcatcaagtagcaaactccatgtgcttaaagcctccaaaagtatggaaagcctgagctgtgatcaggagaatgactcagggctgagtacttcacatggtaatgaaagcagtgaatgtgctataacgttaaagtcacttgattcagttattacagaatcaagtttgataggaactcggcttaatagaaagaagccaccaactctggcattggtgtcacataacagcaaactgccagatgatgtaattactcctgttcaacctccaattcttccctctccttcatttgaattaccaagaatacaacgcgtgcaacgcagcagtagtctagatggtcagtcgacttcacagggaccagtacccagtctttgcgtgaatggccaatccattccagatgtttatgaaaagtgttttgaagacaacttggataacattagcagtgtcagtgcatacccagcatacagatcacttatgtccccaacattacataaaagtaagaacttcacaggaagtcctgagtcatcatactccacggcaagcttctactcatcagcatccaataactctggatcaaggacattgaaagcatcaagtcctgctccagacttgtctgccatgtcttcctccttgtggcacaaagcaggaagaggacaccccatcagtccgtctccaactcttgtgacagtcagatctgcaccagatgagagaacgtcattacaaaaagaaccaagctactcatctttacaagggcatgcagacggcactgacagaacccactcctctcattccagacatcgatacccatatcacagtgaagtgattcttgaaggtgaccttgataatatactaaagaaactttcattggaaaagtaccaaccaatatttgaggaacaggaggtcgacatggaggcatttctaactctgaatgatggagatctcagtgaacttggagtcacacgcaaggatgccagacaacaaattcttgcagctatttctgaactcaacagtggcaaggatcgtgagaggcaacatctgcatgaggcactgtccagttaccatagcagcaattcacatggtacaagtggttatagttctgtctctccttcaacaagtgcaaaccttccacactggcctttaaaacagccaccctag

Transcript

evm.model.Ap4.5863

ATGGATCCCCAAACAAGTAGACTATTGCTGAGCGCTGAACAGGGAAACTTGTCTATGGTTTCAGCGCTCTTAGACAAAAATATCCATGTCGATTCGACGGACGAAGAAGGGGTTAATGCCCTGCATACTGCCGCGTCGAATGGCAATGAAAAAGTTGTAAGTTTGTTATTGTCTAAAGGTGCAAGTTTGGAAGCGAGGACAATCTACGGTTGGACGGCGCTAATGCTGGCTGCTTATTACGGTCATTTCATGGTCTGTTGGATTTTAATACAACACAAAGCTGATATACTCGCTCGAAACGAGCTAGGTTCGACGGCTTTAGATTGTGCGGCACGCAGCGGTCACGTACAGATCGCCGCTCTCTTGATCGAATCATCGCAGGTGAATTCGGAGGACGACACTTCGCAATTATGTCTCGATACTCCGCTAATGAACGCGGCTCAACATGGCCACGAAGCGGCCTTAAAATTGCTTCTTGAAAAGGGGGCAGATGTTAATTATAGACAAGAAACAACGGGGTGGACAGCGCTTATGTTAGCAGCCCTAAATGGGCACATGACCGCAGCGCAAATCTTGGTAGAGTTCGGCGCGGACACGAACGCTCTAAACGATATAGATCAGACTGCACTCGAAATCGCTGTTATACGGCAAAAGACTGAAGTGCAAGGATTTCTCGACGTAAGAACTTCTGCAAGACCGCAAATTAAAGGTCAGAAGTCTGTAAGACCAAGTATCATCCAAGCTGCAAGGAGTGGTAACTTAGCATCTGTCAAAGATTTACTGGACGAGGGGGAAGTTGACATTAATGCCAGAGATGACAATGGTGCAACTCCATTAATGTATGCTGCTATGGTTGGACACTCTGCAATAGTACAGTTACTAATACAAAACGGCGCAGATGTTGACAAACAAGACAAGGCCAGTGGTTGGACAGCATTGATGCAGGCAACTTACTATGGACATAAAGCTGTTGTTAAGTTGCTGATTGACTCAGGAGCTAATGTCAGCATTCAGGAAAAGAATGGTTGTACAGCTTTTGATATGGCCACTATCACTGGTAATACAGAAATCTTGCGTTCATTAGCTTCAGTGAGTATGCAGGTTCCAGCCACTCCTAAGAGCTACTACAGTTCTTCAAGTTTGCAAGTTGACAAGGGAAAGGTTGATGTTAAGAGCCCTAAAAGTATCTTAAAGAAAGATATTTCAAGAATAGATAGTGATACTGGAAGGAAGAACTGGTGGTCTAAAATGTCAAGCAGATTCCGGAACCTCAATGTTGGCCGCACTCTCAGAGTGGCATCATCAAGTAGCAAACTCCATGTGCTTAAAGCCTCCAAAAGTATGGAAAGCCTGAGCTGTGATCAGGAGAATGACTCAGGGCTGAGTACTTCACATGGTAATGAAAGCAGTGAATGTGCTATAACGTTAAAGTCACTTGATTCAGTTATTACAGAATCAAGTTTGATAGGAACTCGGCTTAATAGAAAGAAGCCACCAACTCTGGCATTGGTGTCACATAACAGCAAACTGCCAGATGATGTAATTACTCCTGTTCAACCTCCAATTCTTCCCTCTCCTTCATTTGAATTACCAAGAATACAACGCGTGCAACGCAGCAGTAGTCTAGATGGTCAGTCGACTTCACAGGGACCAGTACCCAGTCTTTGCGTGAATGGCCAATCCATTCCAGATGTTTATGAAAAGTGTTTTGAAGACAACTTGGATAACATTAGCAGTGTCAGTGCATACCCAGCATACAGATCACTTATGTCCCCAACATTACATAAAAGTAAGAACTTCACAGGAAGTCCTGAGTCATCATACTCCACGGCAAGCTTCTACTCATCAGCATCCAATAACTCTGGATCAAGGACATTGAAAGCATCAAGTCCTGCTCCAGACTTGTCTGCCATGTCTTCCTCCTTGTGGCACAAAGCAGGAAGAGGACACCCCATCAGTCCGTCTCCAACTCTTGTGACAGTCAGATCTGCACCAGATGAGAGAACGTCATTACAAAAAGAACCAAGCTACTCATCTTTACAAGGGCATGCAGACGGCACTGACAGAACCCACTCCTCTCATTCCAGACATCGATACCCATATCACAGTGAAGTGATTCTTGAAGGTGACCTTGATAATATACTAAAGAAACTTTCATTGGAAAAGTACCAACCAATATTTGAGGAACAGGAGGTCGACATGGAGGCATTTCTAACTCTGAATGATGGAGATCTCAGTGAACTTGGAGTCACACGCAAGGATGCCAGACAACAAATTCTTGCAGCTATTTCTGAACTCAACAGTGGCAAGGATCGTGAGAGGCAACATCTGCATGAGGCACTGTCCAGTTACCATAGCAGCAATTCACATGGTACAAGTGGTTATAGTTCTGTCTCTCCTTCAACAAGTGCAAACCTTCCACACTGGCCTTTAAAACAGCCACCCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJ13	Ankyrin repeat and SAM domain-containing protein 6 OS=Danio rerio OX=7955 GN=anks6 PE=2 SV=1
P0C0T2	Ankyrin repeat and SAM domain-containing protein 6 OS=Rattus norvegicus OX=10116 GN=Anks6 PE=1 SV=2
Q68DC2	Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens OX=9606 GN=ANKS6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003218 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR051165 all species →	Family	Multifunctional Ankyrin Repeat Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24123 all species →	ANKYRIN REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21415	ANKS6; ankyrin repeat and SAM domain-containing protein 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.