Gene detail

Detailed information of evm.model.Ap4.5870 in Astrangia poculata

Genomic Location: Ap4:43377805...43385623
NR annotation: XP_020624574.1, hepatocyte nuclear factor 4-gamma-like isoform X4 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91766	Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis OX=8355 GN=hnf4a PE=2 SV=2
Q9WUU6	Hepatocyte nuclear factor 4-gamma OS=Mus musculus OX=10090 GN=Hnf4g PE=2 SV=2
P49698	Hepatocyte nuclear factor 4-alpha OS=Mus musculus OX=10090 GN=Hnf4a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004801 (this species only)
Transcription factor family	ESR-like · all TF in this species
Transcription factor family	Miscellaneous · all TF in this species
Transcription factor family	NGFIB-like · all TF in this species
Transcription factor family	RXR-like · all TF in this species
Transcription factor family	SF-like · all TF in this species
Transcription factor family	THR-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104 all species →	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105 all species →	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536 all species →	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR049636 all species →	Domain	Hepatocyte nuclear factor 4-like, DNA-binding domain	Interproscan
IPR001628 all species →	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR050274 all species →	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan
IPR035500 all species →	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR001723 all species →	Family	Nuclear hormone receptor	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR000003 all species →	Family	Retinoid X receptor/HNF4	Interproscan
IPR049635 all species →	Domain	Hepatocyte nuclear factor 4, ligand-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083 all species →	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0004879 all species →	Molecular Function	nuclear receptor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003707 all species →	Molecular Function	nuclear steroid receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07292	NR2A1, HNF4A; hepatocyte nuclear factor 4-alpha	-	Nuclear receptors	ko03310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.