Detailed information of evm.model.Ap4.5891 in Astrangia poculata

Genomic Location: Ap4:43550603...43552384
NR annotation: RMX50855.1, hypothetical protein pdam_00017255 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A5C1ZW08Conodipine-P3 OS=Conus purpurascens OX=41690 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000842 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09056
all species →		Phospholip_A2_3Prokaryotic phospholipase A2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036444
all species →		Homologous_superfamilyPhospholipase A2 domain superfamilyInterproscan
IPR015141
all species →		FamilyPhospholipase A2, prokaryotic/fungalInterproscan

 PANTHER
No PANTHER signature was recorded for evm.model.Ap4.5891 in Astrangia poculata.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0004623
all species →		Molecular Functionphospholipase A2 activityInterproscan
GO:0006644
all species →		Biological Processphospholipid metabolic processInterproscan
GO:0050482
all species →		Biological Processarachidonate secretionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.5891.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.5891 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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