Detailed information of evm.model.Ap4.59 in Astrangia poculata

Genomic Location: Ap4:570472...572560
NR annotation: KAJ7380305.1, hypothetical protein OS493_011025 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q04615Vinculin (Fragment) OS=Xenopus laevis OX=8355 GN=vcl PE=2 SV=1
Q64727Vinculin OS=Mus musculus OX=10090 GN=Vcl PE=1 SV=4
P85972Vinculin OS=Rattus norvegicus OX=10116 GN=Vcl PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006571 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01044
all species →		VinculinVinculin familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006077
all species →		FamilyVinculin/alpha-cateninInterproscan
IPR036723
all species →		Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan
IPR017997
all species →		FamilyVinculinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46180
all species →		VINCULINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0003779
all species →		Molecular Functionactin bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005856
all species →		Cellular ComponentcytoskeletonInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0005912
all species →		Cellular Componentadherens junctionInterproscan
GO:0005925
all species →		Cellular Componentfocal adhesionInterproscan
GO:0008013
all species →		Molecular Functionbeta-catenin bindingInterproscan
GO:0044291
all species →		Cellular Componentcell-cell contact zoneInterproscan
GO:0045294
all species →		Molecular Functionalpha-catenin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.59.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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