Gene detail

Detailed information of evm.model.Ap4.5938 in Astrangia poculata

Genomic Location: Ap4:43981135...44009213
NR annotation: XP_020630906.1, 39S ribosomal protein L38, mitochondrial-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBF3	Large ribosomal subunit protein mL38 OS=Bos taurus OX=9913 GN=MRPL38 PE=1 SV=2
Q96DV4	Large ribosomal subunit protein mL38 OS=Homo sapiens OX=9606 GN=MRPL38 PE=1 SV=2
Q5RDL7	Large ribosomal subunit protein mL38 OS=Pongo abelii OX=9601 GN=MRPL38 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006715 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01161 all species →	PBP	Phosphatidylethanolamine-binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035810 all species →	Family	Phosphatidylethanolamine-binding protein, eukaryotic	Interproscan
IPR036610 all species →	Homologous_superfamily	PEBP-like superfamily	Interproscan
IPR008914 all species →	Family	Phosphatidylethanolamine-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11362 all species →	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17419	MRPL38; large subunit ribosomal protein L38	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.