Gene detail

Detailed information of evm.model.Ap4.5950 in Astrangia poculata

Genomic Location: Ap4:44100692...44107344
NR annotation: KAJ7337246.1, hypothetical protein OS493_010103 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.5950

atgtgtgaatctcttttacgcaacgcatttccaacagtgattcgaaaaaccagcagcgactccgattgcaaacagggcacatctggatcaggcaaagtgacagttcttctactcaactatggtaacagtaaatcgcagctcgctgatggcagttgctgtgacaacgtgaattggtgcgttaatgactgcgacaatttcttccggttgtgtttcgccctgacctcctcatctgacaagtgtgcgctgtggaaaggctggacatctgtacttggtgacgacagtttttcctttccaagtgcaggagggagtcttggaaatggaatcatgaatcctttgtcttacagcttttcaagttggcagccaattgtgtttaatgttgaagtgtgggataacgatgatggcaatgtcgttggagcggataaggactttgttgatcgctactcgttaaccattcaaacaagcccttctccgaatcttgcctctgcaactgccagacgttacaaactgacgggtccgggatcctcctacttaaacgtggaggtaaaagtgttttgcgacgcaaattatttcgtaccggactgttccacatactgtgtggcgcgaaatgacaacactggacattatacttgtgattacacgcgcggccagagagtgtgtttgtctgggtggtacggtaatgactgtctcacttactgtatggccaggaacgacacgttgggacattatagctgtgatggaaatggacaaagacagtgtctagataactggtatggacacaactgcttagtttattgcaaacccagggacgacaccttgggacactacagttgtgatggcaatggacaaaaacactgtctggacagctggtatggtaaggactgcttagtttattgtaagcctagaaatgatactttggggcattacagatgcgatggaaacggacaaagacactgtctagacaactggtatggaaacgcctgcttggtttattgcaagcccataaatgacacgcgaggacattacagatgcaatggcaatggacaaaaacagtgtctggacgactggtatggccaggactgtttggtttattgcaagcccagaaatgacgcgcgaggacattacacgtgcaacagcactggacatattgattgtttacccgggtggagaggaaagaactgcaccgaagagatcgtgtcaagctcaagcacagctgtctccttagcggtaacctcctctacgctgttgacatctacagccataagagacacaacccagttgactccttcgtcagtttatgtatcaactgacgacgtacatgtacttaagaccacgagctccgtgcagtccagagtacttaccaagtcccacagcttctccacaagcaaaaatagccacggcgtgatacaaactaaactgccttattctagcgtgctcaaaaccacaagtactctccacaccatcatcgcggagagcacttcttgtttaacagcagcatggacagcttcacccacaaacgatgtttccaaatctttcctggtatctcgacgttctctgcatgtgcttccatcacatattacaacttctagtgaatttagaaaactgcaaacaaccgaaactaccagggcgactttaagatcagatcatcagactcctctgctttcagaaacgagttcttccagctcaaagactgatgtttccactttgaaatcaacgcctttggttgtatctcgctgcgctaccgaaaacgaggtcacagcgcaacaaactgaaacgtccagcattgcaatcctatcggtgcgacttgatagcactttagaacttcaaacactagcgtcattgtcgcaacgtagcccatcaccgctgagctcttccagctcaaagacaggtgcacccactgttgcttcctctcttcatacttccaaacaagacctcattaaccaaccaactgagacggccaggatggcaatctcctcaacacctgtctatagcactttaggacttcaacataaaacgtcgttgcctcaactgcgttcaccatcaagcgctttcagtccacagacaaacgcgcctactttgatgtcaacgtctaccatttggttgccttgcactgaaaatgaagatattacaacggaaccaagtgtaacgaagaatactacgatgcccttaacatttaaaagtgctataagtacttctcatagtagtagtttacgacttcaatatcagacgtcttcatctcaagagtttataaacccaagccattctagtccacatacagttgcaccttctttgatgtcaaccccatccgctggaatgcgttgtgataaaaatgaagaagtaacagcgctaccaactgttcaacctgaagaaacctcctcaattccgggaatcatggtacacttccagcctgtcaaggatgatcaggaattggcggtacctttagtggtacgaaagatcaagactgttctggcagagcaattgaacacaatttgccgaagaacctctgaggcgtgtgcttcatcggaagaagagatgttcagtacatggttttgtcctcaggatgtaaatgttgagattcatgacgtcacggaaattggcgtgtctttcaaagtgacatccacgctaccaccaccgctgaatggaatggttcctccccaaaccatgatggaaatattaaaggaaagcaagggagatctggaaagcgcaacccaagcagcaatcagttggaaacaagtatttggtctaacgactccacgcatttacaaacctcccgatcagctagctcgtgtctcgtcaagacagaacgctagtccattgccatatattttcgggttcgctggcgcagggttgattctcgttgtggtacttctagttgtgcgagcaaaacttgcaaagaacagggtacaaccatgtgttgatgatgagatgccatcgtctccagcttacgaatgtcaagctgacactatagtcctcctgtcccgaacgaaagataaacatgtttgcaaggatagggaaaaagcaggcctcaacgagggatttgatgttcacccgccaggagccgtcgaagaaaataatttatga

Transcript

evm.model.Ap4.5950

ATGTGTGAATCTCTTTTACGCAACGCATTTCCAACAGTGATTCGAAAAACCAGCAGCGACTCCGATTGCAAACAGGGCACATCTGGATCAGGCAAAGTGACAGTTCTTCTACTCAACTATGGTAACAGTAAATCGCAGCTCGCTGATGGCAGTTGCTGTGACAACGTGAATTGGTGCGTTAATGACTGCGACAATTTCTTCCGGTTGTGTTTCGCCCTGACCTCCTCATCTGACAAGTGTGCGCTGTGGAAAGGCTGGACATCTGTACTTGGTGACGACAGTTTTTCCTTTCCAAGTGCAGGAGGGAGTCTTGGAAATGGAATCATGAATCCTTTGTCTTACAGCTTTTCAAGTTGGCAGCCAATTGTGTTTAATGTTGAAGTGTGGGATAACGATGATGGCAATGTCGTTGGAGCGGATAAGGACTTTGTTGATCGCTACTCGTTAACCATTCAAACAAGCCCTTCTCCGAATCTTGCCTCTGCAACTGCCAGACGTTACAAACTGACGGGTCCGGGATCCTCCTACTTAAACGTGGAGGTAAAAGTGTTTTGCGACGCAAATTATTTCGTACCGGACTGTTCCACATACTGTGTGGCGCGAAATGACAACACTGGACATTATACTTGTGATTACACGCGCGGCCAGAGAGTGTGTTTGTCTGGGTGGTACGGTAATGACTGTCTCACTTACTGTATGGCCAGGAACGACACGTTGGGACATTATAGCTGTGATGGAAATGGACAAAGACAGTGTCTAGATAACTGGTATGGACACAACTGCTTAGTTTATTGCAAACCCAGGGACGACACCTTGGGACACTACAGTTGTGATGGCAATGGACAAAAACACTGTCTGGACAGCTGGTATGGTAAGGACTGCTTAGTTTATTGTAAGCCTAGAAATGATACTTTGGGGCATTACAGATGCGATGGAAACGGACAAAGACACTGTCTAGACAACTGGTATGGAAACGCCTGCTTGGTTTATTGCAAGCCCATAAATGACACGCGAGGACATTACAGATGCAATGGCAATGGACAAAAACAGTGTCTGGACGACTGGTATGGCCAGGACTGTTTGGTTTATTGCAAGCCCAGAAATGACGCGCGAGGACATTACACGTGCAACAGCACTGGACATATTGATTGTTTACCCGGGTGGAGAGGAAAGAACTGCACCGAAGAGATCGTGTCAAGCTCAAGCACAGCTGTCTCCTTAGCGGTAACCTCCTCTACGCTGTTGACATCTACAGCCATAAGAGACACAACCCAGTTGACTCCTTCGTCAGTTTATGTATCAACTGACGACGTACATGTACTTAAGACCACGAGCTCCGTGCAGTCCAGAGTACTTACCAAGTCCCACAGCTTCTCCACAAGCAAAAATAGCCACGGCGTGATACAAACTAAACTGCCTTATTCTAGCGTGCTCAAAACCACAAGTACTCTCCACACCATCATCGCGGAGAGCACTTCTTGTTTAACAGCAGCATGGACAGCTTCACCCACAAACGATGTTTCCAAATCTTTCCTGGTATCTCGACGTTCTCTGCATGTGCTTCCATCACATATTACAACTTCTAGTGAATTTAGAAAACTGCAAACAACCGAAACTACCAGGGCGACTTTAAGATCAGATCATCAGACTCCTCTGCTTTCAGAAACGAGTTCTTCCAGCTCAAAGACTGATGTTTCCACTTTGAAATCAACGCCTTTGGTTGTATCTCGCTGCGCTACCGAAAACGAGGTCACAGCGCAACAAACTGAAACGTCCAGCATTGCAATCCTATCGGTGCGACTTGATAGCACTTTAGAACTTCAAACACTAGCGTCATTGTCGCAACGTAGCCCATCACCGCTGAGCTCTTCCAGCTCAAAGACAGGTGCACCCACTGTTGCTTCCTCTCTTCATACTTCCAAACAAGACCTCATTAACCAACCAACTGAGACGGCCAGGATGGCAATCTCCTCAACACCTGTCTATAGCACTTTAGGACTTCAACATAAAACGTCGTTGCCTCAACTGCGTTCACCATCAAGCGCTTTCAGTCCACAGACAAACGCGCCTACTTTGATGTCAACGTCTACCATTTGGTTGCCTTGCACTGAAAATGAAGATATTACAACGGAACCAAGTGTAACGAAGAATACTACGATGCCCTTAACATTTAAAAGTGCTATAAGTACTTCTCATAGTAGTAGTTTACGACTTCAATATCAGACGTCTTCATCTCAAGAGTTTATAAACCCAAGCCATTCTAGTCCACATACAGTTGCACCTTCTTTGATGTCAACCCCATCCGCTGGAATGCGTTGTGATAAAAATGAAGAAGTAACAGCGCTACCAACTGTTCAACCTGAAGAAACCTCCTCAATTCCGGGAATCATGGTACACTTCCAGCCTGTCAAGGATGATCAGGAATTGGCGGTACCTTTAGTGGTACGAAAGATCAAGACTGTTCTGGCAGAGCAATTGAACACAATTTGCCGAAGAACCTCTGAGGCGTGTGCTTCATCGGAAGAAGAGATGTTCAGTACATGGTTTTGTCCTCAGGATGTAAATGTTGAGATTCATGACGTCACGGAAATTGGCGTGTCTTTCAAAGTGACATCCACGCTACCACCACCGCTGAATGGAATGGTTCCTCCCCAAACCATGATGGAAATATTAAAGGAAAGCAAGGGAGATCTGGAAAGCGCAACCCAAGCAGCAATCAGTTGGAAACAAGTATTTGGTCTAACGACTCCACGCATTTACAAACCTCCCGATCAGCTAGCTCGTGTCTCGTCAAGACAGAACGCTAGTCCATTGCCATATATTTTCGGGTTCGCTGGCGCAGGGTTGATTCTCGTTGTGGTACTTCTAGTTGTGCGAGCAAAACTTGCAAAGAACAGGGTACAACCATGTGTTGATGATGAGATGCCATCGTCTCCAGCTTACGAATGTCAAGCTGACACTATAGTCCTCCTGTCCCGAACGAAAGATAAACATGTTTGCAAGGATAGGGAAAAAGCAGGCCTCAACGAGGGATTTGATGTTCACCCGCCAGGAGCCGTCGAAGAAAATAATTTATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF07657 all species →	MNNL	N terminus of Notch ligand C2-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR042635 all species →	Family	MEGF10/SREC1/2-like	Interproscan
IPR011651 all species →	Domain	Notch ligand, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043 all species →	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005044 all species →	Molecular Function	scavenger receptor activity	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.5950.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.