Genomic Location: Ap4:44461147...44473977
NR annotation: XP_020632669.1, uncharacterized protein LOC110069486 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.5985 |
| Transcript |
| evm.model.Ap4.5985 |
| Protein |
| evm.model.Ap4.5985 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008796 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10341 all species → | TPP1 | Shelterin complex subunit, TPP1/ACD | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019437 all species → | Domain | Shelterin complex subunit TPP1/Est3 | Interproscan |
| IPR028631 all species → | Family | Adrenocortical dysplasia protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14487 all species → | ADRENOCORTICAL DYSPLASIA PROTEIN ACD | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000781 all species → | Cellular Component | chromosome, telomeric region | Interproscan |
| GO:0005697 all species → | Cellular Component | telomerase holoenzyme complex | Interproscan |
| GO:0007004 all species → | Biological Process | telomere maintenance via telomerase | Interproscan |
| GO:0042162 all species → | Molecular Function | telomeric DNA binding | Interproscan |
| GO:0051973 all species → | Biological Process | obsolete positive regulation of telomerase activity | Interproscan |
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0000783 all species → | Cellular Component | nuclear telomere cap complex | Interproscan |
| GO:0016233 all species → | Biological Process | telomere capping | Interproscan |
| GO:0032211 all species → | Biological Process | negative regulation of telomere maintenance via telomerase | Interproscan |
| GO:0070187 all species → | Cellular Component | shelterin complex | Interproscan |
| GO:0070198 all species → | Biological Process | protein localization to chromosome, telomeric region | Interproscan |
evm.model.Ap4.5985.Transcript abundance of evm.model.Ap4.5985 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
