Gene detail

Detailed information of evm.model.Ap4.6043 in Astrangia poculata

Genomic Location: Ap4:44903299...44907024
NR annotation: CAH3139811.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6043

atgtcttctaaattgcctttccttaaaccgacaaatgtcgactgctctggtgttgaagtcttcaactatcaagaattagtgaataaggatgaagttggaagaggatgcttcggtgctgttttcaaagcgcagttgaagacgggagaagaatgcgtcatcaaaaagatgcttggaaacgagatcgaagacaagaaaaactttgttaaggaggcaagaattctgcaaggtctgagacacgaaaacatcgtgggcttgaaaggaatttgtaacgcgccctttgccttggtcttggagtacgtgaacttcgacttcaagcaatttggcgacgttgacacgaaggtgagttccatggaggaatttctaacctgtgttaatctaccagagagcacaggttttctcagttctcacgtgttcaagaccgcctgtaaagatattatgaggggactgcaacaccttcatgggaggggggttgcccacagagatttaaagcctgccaatgttttagtgagtaaccagcactaccgagatctttcaggggatgaactggaaagagcctgggaggaacgccccatagtttgtaagttggctgacttcggggaaggtcgctcagtggaagtccagacgaacactgtgctcaaatcccgaacgcaaagcgtcaaccgcgcaaagtacccttaccgattagaatttgctgatgctcgcaccaaagggcaaacccccctggagtgcctggaagagcggctggtgaaaaagaagcttcctcgggtaccggtcaagcaccaacacaagcacgccactgaatggtacgccattcacaaaatcgcaaaagcctgcacctgcttcgatcctaatgcaagaccaagtgtcgaagaattgatgcctttgatcaacgacgagccgtcggtgtcctctttagatattcatcttgaggtgcatcaagattcgtccatggagaaacacgatctttcgttagccgaattagcgcaattaaccggtaccatttccaaaaacgtcgcccgccccgataatgatggaaccaacgcttgtgcgtttctgagcgttcaactggcccatgaaatccacaagttaaaggagaagtttggcgctaattacaacaaaacatggctaaaagtttgtaaaatagccgagcaagtaatctgtgaatttccgcgtttggtcaacccacatagggatattggagagctatacgatgtcctatctgcttaccacataatcaagaactgttgtgacattgacgagtacgaattttctgaggaaattatctcagcagaacacgttttctctgacaacggccgaaaggaactgttctcttctttgtctaccatggttaccagaaaagaattcagagttgctatttatacctgtgatccagtcatcttcacaattggattcatgaacaagagcttctttattctggacacccactcaatcgcagaggaagccggtggtaaaggaaaaggaatcctgaaggtctttccttacgtagaggatggggaaggtgcttgtgaaggcatatgctattggatatggcagcgattggtttcagccggggttccgaacacagcgtatcagtcactcgcgtttgttacgaaggctcctagaatagacatgcaatttaaggacgttcgcacgaacatcatatactctgacattgatctttatcttaaacgttcaccactagctcaaccaatcaatcgccaagaagaggaacagaaggaacgtcatcggcacaaggccactaagcaaacaaacgacaacgcacccactgacgaacacatgcctgcagatgtggctggtaaagacctatctagtggtgacgcagacatgccaactaatcgccaagaagagaaacagcgagaacgtcatcgccacaaggccactaagaaacctaaaaacaacgcgcccactgaagaacgcacacctgcagatgtggctggtaaagacctatctagtggtgacgcagacatgccaactaatcgccaagaagagaaacagcaggaacgtcatcggcacaaggccactaagaaaactaaaaacaacgcgcccactgaagaacgcatacctgcagatgtggctggtaaagacctatctagtggtgacgcagacatgccaactaatcgccaagaagagaaacagcaggaacgtcatcggcacaaggccactaagaaaactaaaaacaacgcgcccactgaagaacgcatacttgcagatgtggctggtaaagacctatctagtggtgacgcagacatgccaactaatcgccaagaagagaaacagcaggaacttcatcggcacaaggccactaagaaaactaaaaacaacgcgcccactaaagaacgcatacctgcagatgtggctggtaaagacctgtccggtcgtgacgcagacatgcctcgtggtaaagacgtgcacgtggttatagacgtaaccagtgacgtcaacctgaatgacgacaaagatgtgtccggtgttgacgcagatatacccggcgagaaagacgcggtcggggtggaaggcataaccagtaatgaaaacatgcctggcgatgaatacatgcccagtgatgaagacacgtacagtgatgaagacacgtacagtgatgaagacgcgcccagcgtagaagaggttcgcagtcatgcagattccaagcaagcctacaaagaagttgatgaactgcatgaattcattgcatcgcagtctcggcgtaaaagaaagcggtctagcttgtcttccacagacaatcttgaagaagaagaaaccatcggaaaatctcgaaagtcctcaccagctatagagagttcaggtgacactgatcctggatccagcatagagaatagccaacaagaaaaagcagaggggggatctcaacatgggacagatcaaggttag

Transcript

evm.model.Ap4.6043

ATGTCTTCTAAATTGCCTTTCCTTAAACCGACAAATGTCGACTGCTCTGGTGTTGAAGTCTTCAACTATCAAGAATTAGTGAATAAGGATGAAGTTGGAAGAGGATGCTTCGGTGCTGTTTTCAAAGCGCAGTTGAAGACGGGAGAAGAATGCGTCATCAAAAAGATGCTTGGAAACGAGATCGAAGACAAGAAAAACTTTGTTAAGGAGGCAAGAATTCTGCAAGGTCTGAGACACGAAAACATCGTGGGCTTGAAAGGAATTTGTAACGCGCCCTTTGCCTTGGTCTTGGAGTACGTGAACTTCGACTTCAAGCAATTTGGCGACGTTGACACGAAGGTGAGTTCCATGGAGGAATTTCTAACCTGTGTTAATCTACCAGAGAGCACAGGTTTTCTCAGTTCTCACGTGTTCAAGACCGCCTGTAAAGATATTATGAGGGGACTGCAACACCTTCATGGGAGGGGGGTTGCCCACAGAGATTTAAAGCCTGCCAATGTTTTAGTGAGTAACCAGCACTACCGAGATCTTTCAGGGGATGAACTGGAAAGAGCCTGGGAGGAACGCCCCATAGTTTGTAAGTTGGCTGACTTCGGGGAAGGTCGCTCAGTGGAAGTCCAGACGAACACTGTGCTCAAATCCCGAACGCAAAGCGTCAACCGCGCAAAGTACCCTTACCGATTAGAATTTGCTGATGCTCGCACCAAAGGGCAAACCCCCCTGGAGTGCCTGGAAGAGCGGCTGGTGAAAAAGAAGCTTCCTCGGGTACCGGTCAAGCACCAACACAAGCACGCCACTGAATGGTACGCCATTCACAAAATCGCAAAAGCCTGCACCTGCTTCGATCCTAATGCAAGACCAAGTGTCGAAGAATTGATGCCTTTGATCAACGACGAGCCGTCGGTGTCCTCTTTAGATATTCATCTTGAGGTGCATCAAGATTCGTCCATGGAGAAACACGATCTTTCGTTAGCCGAATTAGCGCAATTAACCGGTACCATTTCCAAAAACGTCGCCCGCCCCGATAATGATGGAACCAACGCTTGTGCGTTTCTGAGCGTTCAACTGGCCCATGAAATCCACAAGTTAAAGGAGAAGTTTGGCGCTAATTACAACAAAACATGGCTAAAAGTTTGTAAAATAGCCGAGCAAGTAATCTGTGAATTTCCGCGTTTGGTCAACCCACATAGGGATATTGGAGAGCTATACGATGTCCTATCTGCTTACCACATAATCAAGAACTGTTGTGACATTGACGAGTACGAATTTTCTGAGGAAATTATCTCAGCAGAACACGTTTTCTCTGACAACGGCCGAAAGGAACTGTTCTCTTCTTTGTCTACCATGGTTACCAGAAAAGAATTCAGAGTTGCTATTTATACCTGTGATCCAGTCATCTTCACAATTGGATTCATGAACAAGAGCTTCTTTATTCTGGACACCCACTCAATCGCAGAGGAAGCCGGTGGTAAAGGAAAAGGAATCCTGAAGGTCTTTCCTTACGTAGAGGATGGGGAAGGTGCTTGTGAAGGCATATGCTATTGGATATGGCAGCGATTGGTTTCAGCCGGGGTTCCGAACACAGCGTATCAGTCACTCGCGTTTGTTACGAAGGCTCCTAGAATAGACATGCAATTTAAGGACGTTCGCACGAACATCATATACTCTGACATTGATCTTTATCTTAAACGTTCACCACTAGCTCAACCAATCAATCGCCAAGAAGAGGAACAGAAGGAACGTCATCGGCACAAGGCCACTAAGCAAACAAACGACAACGCACCCACTGACGAACACATGCCTGCAGATGTGGCTGGTAAAGACCTATCTAGTGGTGACGCAGACATGCCAACTAATCGCCAAGAAGAGAAACAGCGAGAACGTCATCGCCACAAGGCCACTAAGAAACCTAAAAACAACGCGCCCACTGAAGAACGCACACCTGCAGATGTGGCTGGTAAAGACCTATCTAGTGGTGACGCAGACATGCCAACTAATCGCCAAGAAGAGAAACAGCAGGAACGTCATCGGCACAAGGCCACTAAGAAAACTAAAAACAACGCGCCCACTGAAGAACGCATACCTGCAGATGTGGCTGGTAAAGACCTATCTAGTGGTGACGCAGACATGCCAACTAATCGCCAAGAAGAGAAACAGCAGGAACGTCATCGGCACAAGGCCACTAAGAAAACTAAAAACAACGCGCCCACTGAAGAACGCATACTTGCAGATGTGGCTGGTAAAGACCTATCTAGTGGTGACGCAGACATGCCAACTAATCGCCAAGAAGAGAAACAGCAGGAACTTCATCGGCACAAGGCCACTAAGAAAACTAAAAACAACGCGCCCACTAAAGAACGCATACCTGCAGATGTGGCTGGTAAAGACCTGTCCGGTCGTGACGCAGACATGCCTCGTGGTAAAGACGTGCACGTGGTTATAGACGTAACCAGTGACGTCAACCTGAATGACGACAAAGATGTGTCCGGTGTTGACGCAGATATACCCGGCGAGAAAGACGCGGTCGGGGTGGAAGGCATAACCAGTAATGAAAACATGCCTGGCGATGAATACATGCCCAGTGATGAAGACACGTACAGTGATGAAGACACGTACAGTGATGAAGACGCGCCCAGCGTAGAAGAGGTTCGCAGTCATGCAGATTCCAAGCAAGCCTACAAAGAAGTTGATGAACTGCATGAATTCATTGCATCGCAGTCTCGGCGTAAAAGAAAGCGGTCTAGCTTGTCTTCCACAGACAATCTTGAAGAAGAAGAAACCATCGGAAAATCTCGAAAGTCCTCACCAGCTATAGAGAGTTCAGGTGACACTGATCCTGGATCCAGCATAGAGAATAGCCAACAAGAAAAAGCAGAGGGGGGATCTCAACATGGGACAGATCAAGGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RLU9	Cyclin-dependent kinase 15 OS=Danio rerio OX=7955 GN=cdk15 PE=2 SV=1
Q6DJM7	Cyclin-dependent kinase 14 OS=Xenopus laevis OX=8355 GN=cdk14 PE=2 SV=1
Q6GLD8	Cyclin-dependent kinase 9 OS=Xenopus tropicalis OX=8364 GN=cdk9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR045269 all species →	Family	Serine/threonine-protein kinase Atg1-like	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24348 all species →	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0042594 all species →	Biological Process	response to starvation	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6043.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.