Gene detail

Detailed information of evm.model.Ap4.6059 in Astrangia poculata

Genomic Location: Ap4:45051797...45079097
NR annotation: XP_027058727.1, mdm2-binding protein-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6059

atggataggttttttatgtttcttgtggttcatggcgatagtagtgcagagcaagaagattgtcagtgccccaaagatgtgattcctgctcttcagagtttggttaaagatcttcttgcattgtctgatgaaagtgaaaactctcccagagaccttgaaaatactaaccttttgttcgaaatgaagaatgttacaccttccatctattttactcttgttgaagataagcctttttcagaaaaatttgagttgtattcaaagtggcatagaggagagcatctcaaggaactgttgagtttacttgaaaagccagttaatcataaagataataatccagatgaatttggtagtttggacagtaacattgatgtttctgaaagacttcaccaacttgcagatgatttaccagaccaagctggagttcccattgatgttgtctggttcatttgtgggaaaactgatataccaatcaggtcccatttgcacctgtttggagcattaaaacgtctacagcaatggcataatgctagcatcactgttctctgcagcaatagctttgacaggcaagttatattttcttgctgtgcacattgtttaaaactgagttcctttaccaagtcctggcagaagggtctgaacttttcagtcagacaactcaataacaatgatgcaactacaaatttattgaatccatctgttttttggcgagggtcgttggtcttctgtgagggtcaatcacgaactgaactaccaagattcagtttatgttgtgaaaggagcaagacaaacattggaccaaaacttcatcaaaaaagaaacaagaaacgtttggctgatattggaagcagtttcttcattgcacctgaaataactatcctttgcaaagttcaaaagagcactgttcctttccacatgtttctgccagtgaaatttgggcttagcgtggagtgctctttcacaaaactttcagcaagattcattgaatggctttctctggaaaagcataaggacattgccttgattggaagtttacaagttgttacaccatccaaacactttttgaaaagaaagaataaagaagcttggttcaattttgtcaaatctgaagatcatatgacaaccaacaaaccagaatccaaagatggacctgaagacctggagtgctgcagacgagtgtgtctcatatgtgggagtactgaaaaagaactgagtctcttcgttttaaggtcacctgaacaacttaatggctggatacaacatgagttgtcattgatccataattcatttcttatttcaaatgatcaagaagtgggaggacccttacaatttccagacctgacagatagtttcttggaaacagaaaaaaatttgactgaagtcttgctatgcaagttacagcaggagctgaaaaatccagacgacatattttcagcttgttcgccttctgaaaaagtggaggaaatgatttcagcaaaatggaagttgttgaaagaggaaagacaacagttgattcatgataggaaagaacatcatctcaataatgttaaaagagaggatttacttcaagacacattagcgttgtcaatgtctccaagtgaatggcctgagagagcatggcttataaagaatgatcctaatgcaatagaaaaagctactaccgcagaggacatgaaaaatccttttccgttgatatcatcagtatcatcactgagtattcaagatatcttggagaagttcagcatggatggaacgcctgccagaagtgatcttgagcctgttcaacccagggaggaacttttaagtggcaaacatgtccaaatatccacagcaagaggtgctgatgatgtcaaagaaaagtgttatccagaagtccttacagcagcgtaccacggcattgaatactgccttgaagctcgtgaagctgtttctaaagattcgcaactagcaaatattcagtattcacatgtaaagcttgaaacgttgtcatcttgcgtgcaaagagaccacaaaccacaggaaacccgcccaaaacgaactgtgacaaaatcggcgaaaagtgacaagaaacaaagtttaatgaagctcagcgtacctttgaccaaaacagggactgcgggaaagggaaagaaagcaactactttcataggaaggacgataaagaggaaatcaccagtggcaacaaagccagccactgctacaaaaagaaagcgagaagagccagaagtgaaagaaagtacagtaagcgaggcaaatgacgataagaacaaagaaactcgttcagagagacacaagagacgtctccgccaagttgttcagaaaacgctcgaagacaatggaattgaccaagatcatccattctacaaatcatgcactgaaagattgtactctctgtgtaaaagtttccttaaggatcttcgctcttctcatggtttaaacgaagaaatgaaaagattggcgaagagtaatgttatacaggtgatcgactttgagacgaaaagaaaatcagcggcacaaaagacatga

Transcript

evm.model.Ap4.6059

ATGGATAGGTTTTTTATGTTTCTTGTGGTTCATGGCGATAGTAGTGCAGAGCAAGAAGATTGTCAGTGCCCCAAAGATGTGATTCCTGCTCTTCAGAGTTTGGTTAAAGATCTTCTTGCATTGTCTGATGAAAGTGAAAACTCTCCCAGAGACCTTGAAAATACTAACCTTTTGTTCGAAATGAAGAATGTTACACCTTCCATCTATTTTACTCTTGTTGAAGATAAGCCTTTTTCAGAAAAATTTGAGTTGTATTCAAAGTGGCATAGAGGAGAGCATCTCAAGGAACTGTTGAGTTTACTTGAAAAGCCAGTTAATCATAAAGATAATAATCCAGATGAATTTGGTAGTTTGGACAGTAACATTGATGTTTCTGAAAGACTTCACCAACTTGCAGATGATTTACCAGACCAAGCTGGAGTTCCCATTGATGTTGTCTGGTTCATTTGTGGGAAAACTGATATACCAATCAGGTCCCATTTGCACCTGTTTGGAGCATTAAAACGTCTACAGCAATGGCATAATGCTAGCATCACTGTTCTCTGCAGCAATAGCTTTGACAGGCAAGTTATATTTTCTTGCTGTGCACATTGTTTAAAACTGAGTTCCTTTACCAAGTCCTGGCAGAAGGGTCTGAACTTTTCAGTCAGACAACTCAATAACAATGATGCAACTACAAATTTATTGAATCCATCTGTTTTTTGGCGAGGGTCGTTGGTCTTCTGTGAGGGTCAATCACGAACTGAACTACCAAGATTCAGTTTATGTTGTGAAAGGAGCAAGACAAACATTGGACCAAAACTTCATCAAAAAAGAAACAAGAAACGTTTGGCTGATATTGGAAGCAGTTTCTTCATTGCACCTGAAATAACTATCCTTTGCAAAGTTCAAAAGAGCACTGTTCCTTTCCACATGTTTCTGCCAGTGAAATTTGGGCTTAGCGTGGAGTGCTCTTTCACAAAACTTTCAGCAAGATTCATTGAATGGCTTTCTCTGGAAAAGCATAAGGACATTGCCTTGATTGGAAGTTTACAAGTTGTTACACCATCCAAACACTTTTTGAAAAGAAAGAATAAAGAAGCTTGGTTCAATTTTGTCAAATCTGAAGATCATATGACAACCAACAAACCAGAATCCAAAGATGGACCTGAAGACCTGGAGTGCTGCAGACGAGTGTGTCTCATATGTGGGAGTACTGAAAAAGAACTGAGTCTCTTCGTTTTAAGGTCACCTGAACAACTTAATGGCTGGATACAACATGAGTTGTCATTGATCCATAATTCATTTCTTATTTCAAATGATCAAGAAGTGGGAGGACCCTTACAATTTCCAGACCTGACAGATAGTTTCTTGGAAACAGAAAAAAATTTGACTGAAGTCTTGCTATGCAAGTTACAGCAGGAGCTGAAAAATCCAGACGACATATTTTCAGCTTGTTCGCCTTCTGAAAAAGTGGAGGAAATGATTTCAGCAAAATGGAAGTTGTTGAAAGAGGAAAGACAACAGTTGATTCATGATAGGAAAGAACATCATCTCAATAATGTTAAAAGAGAGGATTTACTTCAAGACACATTAGCGTTGTCAATGTCTCCAAGTGAATGGCCTGAGAGAGCATGGCTTATAAAGAATGATCCTAATGCAATAGAAAAAGCTACTACCGCAGAGGACATGAAAAATCCTTTTCCGTTGATATCATCAGTATCATCACTGAGTATTCAAGATATCTTGGAGAAGTTCAGCATGGATGGAACGCCTGCCAGAAGTGATCTTGAGCCTGTTCAACCCAGGGAGGAACTTTTAAGTGGCAAACATGTCCAAATATCCACAGCAAGAGGTGCTGATGATGTCAAAGAAAAGTGTTATCCAGAAGTCCTTACAGCAGCGTACCACGGCATTGAATACTGCCTTGAAGCTCGTGAAGCTGTTTCTAAAGATTCGCAACTAGCAAATATTCAGTATTCACATGTAAAGCTTGAAACGTTGTCATCTTGCGTGCAAAGAGACCACAAACCACAGGAAACCCGCCCAAAACGAACTGTGACAAAATCGGCGAAAAGTGACAAGAAACAAAGTTTAATGAAGCTCAGCGTACCTTTGACCAAAACAGGGACTGCGGGAAAGGGAAAGAAAGCAACTACTTTCATAGGAAGGACGATAAAGAGGAAATCACCAGTGGCAACAAAGCCAGCCACTGCTACAAAAAGAAAGCGAGAAGAGCCAGAAGTGAAAGAAAGTACAGTAAGCGAGGCAAATGACGATAAGAACAAAGAAACTCGTTCAGAGAGACACAAGAGACGTCTCCGCCAAGTTGTTCAGAAAACGCTCGAAGACAATGGAATTGACCAAGATCATCCATTCTACAAATCATGCACTGAAAGATTGTACTCTCTGTGTAAAAGTTTCCTTAAGGATCTTCGCTCTTCTCATGGTTTAAACGAAGAAATGAAAAGATTGGCGAAGAGTAATGTTATACAGGTGATCGACTTTGAGACGAAAAGAAAATCAGCGGCACAAAAGACATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRW0	Mdm2-binding protein OS=Xenopus laevis OX=8355 GN=mtbp PE=2 SV=1
Q96DY7	Mdm2-binding protein OS=Homo sapiens OX=9606 GN=MTBP PE=1 SV=1
Q0P4G8	Mdm2-binding protein OS=Xenopus tropicalis OX=8364 GN=mtbp PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003774 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14918 all species →	MTBP_N	MDM2-binding	Family	Interproscan
PF14920 all species →	MTBP_C	MDM2-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029421 all species →	Domain	MDM2-binding protein, N-terminal domain	Interproscan
IPR039061 all species →	Family	MDN2-binding protein	Interproscan
IPR029418 all species →	Domain	MDN2-binding protein, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14382 all species →	MDM2-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0007089 all species →	Biological Process	traversing start control point of mitotic cell cycle	Interproscan
GO:0031396 all species →	Biological Process	regulation of protein ubiquitination	Interproscan
GO:0034501 all species →	Biological Process	protein localization to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26116	MTBP; Mdm2-binding protein	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.