Genomic Location: Ap4:45481903...45491468
NR annotation: XP_020628715.1, allene oxide synthase-lipoxygenase protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6120 |
| Transcript |
| evm.model.Ap4.6120 |
| Protein |
| evm.model.Ap4.6120 |
| UniProt accession | Description |
|---|---|
| O16025 | Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1 |
| P12527 | Polyunsaturated fatty acid 5-lipoxygenase OS=Rattus norvegicus OX=10116 GN=Alox5 PE=1 SV=3 |
| P48999 | Polyunsaturated fatty acid 5-lipoxygenase OS=Mus musculus OX=10090 GN=Alox5 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000519 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00305 all species → | Lipoxygenase | Lipoxygenase | Domain | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020834 all species → | Conserved_site | Lipoxygenase, conserved site | Interproscan |
| IPR013819 all species → | Domain | Lipoxygenase, C-terminal | Interproscan |
| IPR001885 all species → | Family | Lipoxygenase, mammalian | Interproscan |
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR036226 all species → | Homologous_superfamily | Lipoxigenase, C-terminal domain superfamily | Interproscan |
| IPR020835 all species → | Homologous_superfamily | Catalase superfamily | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR000907 all species → | Family | Lipoxygenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11771 all species → | LIPOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016702 all species → | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0034440 all species → | Biological Process | lipid oxidation | Interproscan |
evm.model.Ap4.6120.Transcript abundance of evm.model.Ap4.6120 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
