Genomic Location: Ap4:45534752...45567948
NR annotation: XP_020628664.1, uncharacterized protein LOC110065839 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6124 |
| Transcript |
| evm.model.Ap4.6124 |
| Protein |
| evm.model.Ap4.6124 |
| UniProt accession | Description |
|---|---|
| Q9NR09 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3 |
| O88738 | Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2 |
| Q11076 | Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans OX=6239 GN=ubc-17 PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008832 (this species only) · gene tree & orthology |
| Ubiquitin family | E2|UBC|UBC · all ubiquitin genes in this species |
| Ubiquitin family | UBD|UBC-like|UBC · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10408 all species → | Ufd2P_core | Ubiquitin elongating factor core | Family | Interproscan |
| PF00179 all species → | UQ_con | Ubiquitin-conjugating enzyme | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016135 all species → | Homologous_superfamily | Ubiquitin-conjugating enzyme/RWD-like | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR000608 all species → | Domain | Ubiquitin-conjugating enzyme E2 | Interproscan |
| IPR019474 all species → | Domain | Ubiquitin conjugation factor E4, core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46116 all species → | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0034450 all species → | Molecular Function | ubiquitin-ubiquitin ligase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21852 | DOCK6_7_8; dedicator of cytokinesis protein 6/7/8 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap4.6124 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
