Gene detail

Detailed information of evm.model.Ap4.6145 in Astrangia poculata

Genomic Location: Ap4:45716173...45735292
NR annotation: CAH3041262.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6145

atggccaccaaaggaagcgaagacagtagctacgatgttgtttctactacttttccaaaggaaatctgctttatagacgcacagataaacagcctgtttgaaatccatctggattctggattgatttctatgaatctacactgcaacaacatttcggtgatagagaaccttgatcgactgcagcacctaaaacatcttgatctgtcatcaaatcacatcacaagaatgcaaggacttggtggtctgaagagtctcaagactcttaacttatcttgcaatgaactgcaagttgtggaaggacttgacaatttgaggaatctgatcaggctggacttgtcttacaatatgattcgcgatctctcagggttaaagaaacttcatggaccttcttttagtttaaagggcttatatctccatggaaaccagctctgctcactggatcatgtgatcaactgtctgaatggttgtagaatgctaaaagaattaacaatgtctcagtatggagaagctaatcctgtgtgtgagatgacagcataccgatccagtgtactaacaacactgaaaacactagaagtgttagatgggcttgaccgcgcaggaaaaccagcagcaacaaaagatgatgtgttaagcattccagaaatggatgactatttagaataccttaaatcagagagttcggctgagagtccttctgtaagttgggtgatttttatcagaagcaaatcatctaacgttatgttgcaccctttacagagagattccaagtatgaagttgtgactccaagaattgactcggtgctggacagattcagacagcgtggaccactgccatcatcagaaactgaaactggcgaggaaaggaggatagaagagcctccagagaagaaaccgcctgtaaaagtaagcctgtcagctgatcatgaagttcgattagagacccttgaacatcagctctcccatctgattcacaacacgccaaaagaaccagcgaacgccagttaccaagaaagtacaaacaaagacacaaagccagcagttcatgttacagtcagtcaacaagctcaacttcaccctcagatgaacaagaagaaacggcttggcggggtgaaaggaccctgtcagagaccaagatctctcattcaagaactagacgctgagcgtgaacgacggtggaaagctgaacaggctgcaaggagaatggttgatgccgttaaagagttacaacttaaagaggcggaggagaagaagcttagagaagcttcactcgccgcgagcagtaggttaaaacgtgcactgcttaaagaaaaggaagccaaagattctcttcagaaagctctgagtgaagtgcaggcacaaaatattgagcttagtgaagaagtaaaaaggctaaaagaaagcgaggaagagcaacagagaacgctgcgtgcattggagcaagccactaccaagatggagacagaaaagatcaaacagcatgctgaggcggtctcccagttacagcaggagcagatgaaggtaggcgccttgacgagggaatgtgaactgtccaaacactcagttaaacaactcaagggtcaggtacatcaactgcaggaactgctggctaacagagagcaggaacacagaaaagcagtggaaggccttgtacgagctgacagtcaagaggtgcgagagatagtagaccgggaggttgctaagcaggaaggttttcaccaacagattattaaagaatatcaagacaagttaaacaagcgagacctggaatatgtcgctctagaagacgaatttaggatgggtcttcagattgaagccaaccggttcagagagcttcaagaagcctttgagcgagtcagcgatgagagcgctcaacaaaaagaagctctacactcgattaaacagaaggaaaacaaatctactaccatggtcaacgaactcacggcgatggtgaaggagcaacgtggaagaatcagtgaactgtcgcgagggaggcaagaaatagtcggggattacaaggaaagaatacagagtttggagaaacaagtgaacgaatctcacaaacagttgacaagactggaagtactagaacaggacaaagctaagttgacagctcagatacgagctcaaggatcagttatcgaaggccttagaactgagagaaagttatggagcgaggagctcgcacaacaaggttcatcacttgcccaggatcgcggacgaatggaagcgcgcattgaagcactgactgctgaggtcagtgagctgaagaaggaatgccagagcgccaatgaaacgatagctatcaagtccaaagttatcgaggatcagacggactccataagaaaactcaaacagaaactcgcagatcgagagtctgatatgcgccaaaagaaagaagacagcaaaacacgcgagaaaaaccttgaagagcaattagcagctgagtcatctgctaatcaagagctgcaggaacaattggatgcgcttgtggaccgcaaggaatccctcaagcaagtactcaagaaaacacaagacgatctacaaactagtaaagaaaatcacagaacgctaaaaacaaagtggcaggaaaagagtgaactgattggcaagctggagaaggaagtcgtggaaatgcgaaacaactttaaagagaaagaaaaaacgttgactgatgagagagacaaagccatccaagcggccaattctgccgtggagaggttaaaagcctgtgatgacgctttccgcaaacagctggaacaggaaagacaaacacacgaacaacagattcaaacattgaccaatgaaaagcaacaacaaatagaacaagcaaacactagggttttggaagtagaggatgagatgcgcatactattacaagataatgcgctgaccaagaaaaccttagaaaaacgccttcagaaactcacatcagcttttactgaaattcagcacgacttagccggaacgtga

Transcript

evm.model.Ap4.6145

ATGGCCACCAAAGGAAGCGAAGACAGTAGCTACGATGTTGTTTCTACTACTTTTCCAAAGGAAATCTGCTTTATAGACGCACAGATAAACAGCCTGTTTGAAATCCATCTGGATTCTGGATTGATTTCTATGAATCTACACTGCAACAACATTTCGGTGATAGAGAACCTTGATCGACTGCAGCACCTAAAACATCTTGATCTGTCATCAAATCACATCACAAGAATGCAAGGACTTGGTGGTCTGAAGAGTCTCAAGACTCTTAACTTATCTTGCAATGAACTGCAAGTTGTGGAAGGACTTGACAATTTGAGGAATCTGATCAGGCTGGACTTGTCTTACAATATGATTCGCGATCTCTCAGGGTTAAAGAAACTTCATGGACCTTCTTTTAGTTTAAAGGGCTTATATCTCCATGGAAACCAGCTCTGCTCACTGGATCATGTGATCAACTGTCTGAATGGTTGTAGAATGCTAAAAGAATTAACAATGTCTCAGTATGGAGAAGCTAATCCTGTGTGTGAGATGACAGCATACCGATCCAGTGTACTAACAACACTGAAAACACTAGAAGTGTTAGATGGGCTTGACCGCGCAGGAAAACCAGCAGCAACAAAAGATGATGTGTTAAGCATTCCAGAAATGGATGACTATTTAGAATACCTTAAATCAGAGAGTTCGGCTGAGAGTCCTTCTGTAAGTTGGGTGATTTTTATCAGAAGCAAATCATCTAACGTTATGTTGCACCCTTTACAGAGAGATTCCAAGTATGAAGTTGTGACTCCAAGAATTGACTCGGTGCTGGACAGATTCAGACAGCGTGGACCACTGCCATCATCAGAAACTGAAACTGGCGAGGAAAGGAGGATAGAAGAGCCTCCAGAGAAGAAACCGCCTGTAAAAGTAAGCCTGTCAGCTGATCATGAAGTTCGATTAGAGACCCTTGAACATCAGCTCTCCCATCTGATTCACAACACGCCAAAAGAACCAGCGAACGCCAGTTACCAAGAAAGTACAAACAAAGACACAAAGCCAGCAGTTCATGTTACAGTCAGTCAACAAGCTCAACTTCACCCTCAGATGAACAAGAAGAAACGGCTTGGCGGGGTGAAAGGACCCTGTCAGAGACCAAGATCTCTCATTCAAGAACTAGACGCTGAGCGTGAACGACGGTGGAAAGCTGAACAGGCTGCAAGGAGAATGGTTGATGCCGTTAAAGAGTTACAACTTAAAGAGGCGGAGGAGAAGAAGCTTAGAGAAGCTTCACTCGCCGCGAGCAGTAGGTTAAAACGTGCACTGCTTAAAGAAAAGGAAGCCAAAGATTCTCTTCAGAAAGCTCTGAGTGAAGTGCAGGCACAAAATATTGAGCTTAGTGAAGAAGTAAAAAGGCTAAAAGAAAGCGAGGAAGAGCAACAGAGAACGCTGCGTGCATTGGAGCAAGCCACTACCAAGATGGAGACAGAAAAGATCAAACAGCATGCTGAGGCGGTCTCCCAGTTACAGCAGGAGCAGATGAAGGTAGGCGCCTTGACGAGGGAATGTGAACTGTCCAAACACTCAGTTAAACAACTCAAGGGTCAGGTACATCAACTGCAGGAACTGCTGGCTAACAGAGAGCAGGAACACAGAAAAGCAGTGGAAGGCCTTGTACGAGCTGACAGTCAAGAGGTGCGAGAGATAGTAGACCGGGAGGTTGCTAAGCAGGAAGGTTTTCACCAACAGATTATTAAAGAATATCAAGACAAGTTAAACAAGCGAGACCTGGAATATGTCGCTCTAGAAGACGAATTTAGGATGGGTCTTCAGATTGAAGCCAACCGGTTCAGAGAGCTTCAAGAAGCCTTTGAGCGAGTCAGCGATGAGAGCGCTCAACAAAAAGAAGCTCTACACTCGATTAAACAGAAGGAAAACAAATCTACTACCATGGTCAACGAACTCACGGCGATGGTGAAGGAGCAACGTGGAAGAATCAGTGAACTGTCGCGAGGGAGGCAAGAAATAGTCGGGGATTACAAGGAAAGAATACAGAGTTTGGAGAAACAAGTGAACGAATCTCACAAACAGTTGACAAGACTGGAAGTACTAGAACAGGACAAAGCTAAGTTGACAGCTCAGATACGAGCTCAAGGATCAGTTATCGAAGGCCTTAGAACTGAGAGAAAGTTATGGAGCGAGGAGCTCGCACAACAAGGTTCATCACTTGCCCAGGATCGCGGACGAATGGAAGCGCGCATTGAAGCACTGACTGCTGAGGTCAGTGAGCTGAAGAAGGAATGCCAGAGCGCCAATGAAACGATAGCTATCAAGTCCAAAGTTATCGAGGATCAGACGGACTCCATAAGAAAACTCAAACAGAAACTCGCAGATCGAGAGTCTGATATGCGCCAAAAGAAAGAAGACAGCAAAACACGCGAGAAAAACCTTGAAGAGCAATTAGCAGCTGAGTCATCTGCTAATCAAGAGCTGCAGGAACAATTGGATGCGCTTGTGGACCGCAAGGAATCCCTCAAGCAAGTACTCAAGAAAACACAAGACGATCTACAAACTAGTAAAGAAAATCACAGAACGCTAAAAACAAAGTGGCAGGAAAAGAGTGAACTGATTGGCAAGCTGGAGAAGGAAGTCGTGGAAATGCGAAACAACTTTAAAGAGAAAGAAAAAACGTTGACTGATGAGAGAGACAAAGCCATCCAAGCGGCCAATTCTGCCGTGGAGAGGTTAAAAGCCTGTGATGACGCTTTCCGCAAACAGCTGGAACAGGAAAGACAAACACACGAACAACAGATTCAAACATTGACCAATGAAAAGCAACAACAAATAGAACAAGCAAACACTAGGGTTTTGGAAGTAGAGGATGAGATGCGCATACTATTACAAGATAATGCGCTGACCAAGAAAACCTTAGAAAAACGCCTTCAGAAACTCACATCAGCTTTTACTGAAATTCAGCACGACTTAGCCGGAACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRC9	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=lrrcc1 PE=2 SV=1
Q69ZB0	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Lrrcc1 PE=2 SV=2
Q9C099	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=LRRCC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003961 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050576 all species →	Family	Ciliary and flagellar integrity-associated protein	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45973 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16475	LRRCC1, CLERC; leucine-rich repeat and coiled-coil domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.