Genomic Location: Ap4:45919890...45945917
NR annotation: RMX43069.1, hypothetical protein pdam_00015284, partial [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6174 |
| Transcript |
| evm.model.Ap4.6174 |
| Protein |
| evm.model.Ap4.6174 |
| UniProt accession | Description |
|---|---|
| Q6P6Y1 | RAB11-binding protein RELCH homolog OS=Danio rerio OX=7955 GN=relch PE=2 SV=1 |
| Q148V7 | RAB11-binding protein RELCH OS=Mus musculus OX=10090 GN=Relch PE=1 SV=1 |
| Q9P260 | RAB11-binding protein RELCH OS=Homo sapiens OX=9606 GN=RELCH PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004483 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12012 all species → | DUF3504 | Domain of unknown function (DUF3504) | Family | Interproscan |
| PF02985 all species → | HEAT | HEAT repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021133 all species → | Repeat | HEAT, type 2 | Interproscan |
| IPR021893 all species → | Domain | Domain of unknown function DUF3504 | Interproscan |
| IPR000357 all species → | Repeat | HEAT repeat | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR040362 all species → | Family | RAB11-binding protein RELCH | Interproscan |
| IPR006594 all species → | Conserved_site | LIS1 homology motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32059 all species → | RAB11-BINDING PROTEIN RELCH | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005802 all species → | Cellular Component | trans-Golgi network | Interproscan |
| GO:0032367 all species → | Biological Process | intracellular cholesterol transport | Interproscan |
| GO:0055037 all species → | Cellular Component | recycling endosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26154 | RELCH; RAB11-binding protein RELCH | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap4.6174 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
