Gene detail

Detailed information of evm.model.Ap4.6265 in Astrangia poculata

Genomic Location: Ap4:46770112...46781210
NR annotation: PFX24941.1, Galactosylceramide sulfotransferase [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6265

atgatgaattttagaaagaggattgttttggtgatcgcattttgtctcattgccgtgggacttctatcattacttagaaatgagagcaagccgcttgtgagcttaggcagcttaaaaaggaaaacggagttaaatgacgacttactaaaagcgacaatgcaaggctgcctttcagacaaacagtcactgaatgtcacgagtgtcacgccatctccatgcaagcctgccaataacatattatttctcaagttacacaagactggttcaagtacactgaccaatattttaaaccgttatggtgacaccagagatctaatgttcgctttaccatcttcccaaaaaagttattcattttactggcctcatccctttgtacttaagtttacacagcctctttggaaagcccctaacatcatttgcaatcatgcaagatacaacaaagctcctatgaactggcttttcccaaaggaaacgactcgctacattacactattgagagaaccaactcaacaattggaatctatttttaacttttttcaccttaagaatcgtttcaaagaaataaaaaacgtttcgtcccctctggaaaaatttcttcagaatgcgactaattatcttggacaattacaagagaaagaaatcactggttccttgaaactgataaagaacccagcgctgtttgaactgggtcttgatacaaaatatcacagcgatataactgtggtgcaaaactacattaattttctacaaaaagagttcgacttggtaatgcttatggaatacttcgatgaatcacttgtgctcctaaaacgacgcttttgctggaaaatcgaagacattttgtatttcaaactcaacgaaagaagggacaaagataaacaagaactttcaagcgaagcgaaagagcaaattcggaaatggaattcgggtgatctgttattgtatgaagtttctaatcaaacactatggaaaatgataaaagaagaaggaccagatttcttcaccgatcttgcgttctttcgaaaagaattagaatacataaaaaatgcttgtctacaagaagggaatttcctgaccaagccgtacgctggaaggctagtgcagggatacgcaatcaaagcaaatatttccaaggaactgaacgaaacttgcagtaaaatgatcaagaatgaaattccatatatggattatttgcgtgaaaaaatgaacaaacagctttatgatattgacaagtaccacattggggaaacagagcggctttttgagaacttgtggagagagactctacacgtctttcattccgacaagcaatcacggaatgtcacgccatctccatgcaaacctgtgaatgacattttgttcctcaagacgcacaagactggttcaagtacagtgacgaatatattaaaccgttatggggatacaagaagtcttgtgttcgctttaccggcttcgcaaaaaagctattcccttaactggccccatccctttacacagggggctgtagcacgggcatattggaaagcgccaaacatcctttgcaatcatgcaaggtacaacaaagctcccatgaacaaacttttcccaaaggaaacaactcgctacattacacttttgagggaaccaactcgacattttgaatctatttttaacttttttcaccttaagaaacattttaaggaattgcggaacgtttcatatcctctggaaaaatttcttcaaaatgcgacaagttatcttggacaattgcaagataaagagaaacacatcaccagtttttttaacctaataaaaaatccagccttgtttgaactgggtcttgatacaaaatatcacgccaatttaactgtggtgcaaaactacattcggtttctacaaaaagagttcgatctggttatgcttatggaatatttcgacgaatctcttgtgctcctaaaacgacgtttttgctggaaaatggaagacattttgtatttcaaactcaacgaaaggagaagtcatcaaaaacagagtctttctggtaaagcccaagagcaaattcaaaagtggaatttgggtgatgtgttattgtacgatgcctttcatcaaacactatggaaaatgataaaagcagaaggtcccgatttcttcaacgatctcgcattttttcgaaaggagttagtatccataaaaaatgcttgtctacgggaaggaaatttcctgaccaagccgtacgctggaaggctagtgcagggttatgcagtcaaatcaaatatttctaaagaactgcacgaaacttgcaataaaatgatcatgaatgagattccatatttggattatcatcgccaaagaataaataaacagcttcaagtaattgtcgacaaatttgttcacgaacaagatcttttaaaataa

Transcript

evm.model.Ap4.6265

ATGATGAATTTTAGAAAGAGGATTGTTTTGGTGATCGCATTTTGTCTCATTGCCGTGGGACTTCTATCATTACTTAGAAATGAGAGCAAGCCGCTTGTGAGCTTAGGCAGCTTAAAAAGGAAAACGGAGTTAAATGACGACTTACTAAAAGCGACAATGCAAGGCTGCCTTTCAGACAAACAGTCACTGAATGTCACGAGTGTCACGCCATCTCCATGCAAGCCTGCCAATAACATATTATTTCTCAAGTTACACAAGACTGGTTCAAGTACACTGACCAATATTTTAAACCGTTATGGTGACACCAGAGATCTAATGTTCGCTTTACCATCTTCCCAAAAAAGTTATTCATTTTACTGGCCTCATCCCTTTGTACTTAAGTTTACACAGCCTCTTTGGAAAGCCCCTAACATCATTTGCAATCATGCAAGATACAACAAAGCTCCTATGAACTGGCTTTTCCCAAAGGAAACGACTCGCTACATTACACTATTGAGAGAACCAACTCAACAATTGGAATCTATTTTTAACTTTTTTCACCTTAAGAATCGTTTCAAAGAAATAAAAAACGTTTCGTCCCCTCTGGAAAAATTTCTTCAGAATGCGACTAATTATCTTGGACAATTACAAGAGAAAGAAATCACTGGTTCCTTGAAACTGATAAAGAACCCAGCGCTGTTTGAACTGGGTCTTGATACAAAATATCACAGCGATATAACTGTGGTGCAAAACTACATTAATTTTCTACAAAAAGAGTTCGACTTGGTAATGCTTATGGAATACTTCGATGAATCACTTGTGCTCCTAAAACGACGCTTTTGCTGGAAAATCGAAGACATTTTGTATTTCAAACTCAACGAAAGAAGGGACAAAGATAAACAAGAACTTTCAAGCGAAGCGAAAGAGCAAATTCGGAAATGGAATTCGGGTGATCTGTTATTGTATGAAGTTTCTAATCAAACACTATGGAAAATGATAAAAGAAGAAGGACCAGATTTCTTCACCGATCTTGCGTTCTTTCGAAAAGAATTAGAATACATAAAAAATGCTTGTCTACAAGAAGGGAATTTCCTGACCAAGCCGTACGCTGGAAGGCTAGTGCAGGGATACGCAATCAAAGCAAATATTTCCAAGGAACTGAACGAAACTTGCAGTAAAATGATCAAGAATGAAATTCCATATATGGATTATTTGCGTGAAAAAATGAACAAACAGCTTTATGATATTGACAAGTACCACATTGGGGAAACAGAGCGGCTTTTTGAGAACTTGTGGAGAGAGACTCTACACGTCTTTCATTCCGACAAGCAATCACGGAATGTCACGCCATCTCCATGCAAACCTGTGAATGACATTTTGTTCCTCAAGACGCACAAGACTGGTTCAAGTACAGTGACGAATATATTAAACCGTTATGGGGATACAAGAAGTCTTGTGTTCGCTTTACCGGCTTCGCAAAAAAGCTATTCCCTTAACTGGCCCCATCCCTTTACACAGGGGGCTGTAGCACGGGCATATTGGAAAGCGCCAAACATCCTTTGCAATCATGCAAGGTACAACAAAGCTCCCATGAACAAACTTTTCCCAAAGGAAACAACTCGCTACATTACACTTTTGAGGGAACCAACTCGACATTTTGAATCTATTTTTAACTTTTTTCACCTTAAGAAACATTTTAAGGAATTGCGGAACGTTTCATATCCTCTGGAAAAATTTCTTCAAAATGCGACAAGTTATCTTGGACAATTGCAAGATAAAGAGAAACACATCACCAGTTTTTTTAACCTAATAAAAAATCCAGCCTTGTTTGAACTGGGTCTTGATACAAAATATCACGCCAATTTAACTGTGGTGCAAAACTACATTCGGTTTCTACAAAAAGAGTTCGATCTGGTTATGCTTATGGAATATTTCGACGAATCTCTTGTGCTCCTAAAACGACGTTTTTGCTGGAAAATGGAAGACATTTTGTATTTCAAACTCAACGAAAGGAGAAGTCATCAAAAACAGAGTCTTTCTGGTAAAGCCCAAGAGCAAATTCAAAAGTGGAATTTGGGTGATGTGTTATTGTACGATGCCTTTCATCAAACACTATGGAAAATGATAAAAGCAGAAGGTCCCGATTTCTTCAACGATCTCGCATTTTTTCGAAAGGAGTTAGTATCCATAAAAAATGCTTGTCTACGGGAAGGAAATTTCCTGACCAAGCCGTACGCTGGAAGGCTAGTGCAGGGTTATGCAGTCAAATCAAATATTTCTAAAGAACTGCACGAAACTTGCAATAAAATGATCATGAATGAGATTCCATATTTGGATTATCATCGCCAAAGAATAAATAAACAGCTTCAAGTAATTGTCGACAAATTTGTTCACGAACAAGATCTTTTAAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QNK1	Galactosylceramide sulfotransferase OS=Bos taurus OX=9913 GN=GAL3ST1 PE=2 SV=1
Q9JHE4	Galactosylceramide sulfotransferase OS=Mus musculus OX=10090 GN=Gal3st1 PE=1 SV=2
Q99999	Galactosylceramide sulfotransferase OS=Homo sapiens OX=9606 GN=GAL3ST1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06990 all species →	Gal-3-0_sulfotr	Galactose-3-O-sulfotransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009729 all species →	Family	Galactose-3-O-sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14647 all species →	GALACTOSE-3-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001733 all species →	Molecular Function	galactosylceramide sulfotransferase activity	Interproscan
GO:0009247 all species →	Biological Process	glycolipid biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01019	GAL3ST1; galactosylceramide sulfotransferase	EC:2.8.2.11	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.