Detailed information of evm.model.Ap4.6279 in Astrangia poculata

Genomic Location: Ap4:46956175...46968964
NR annotation: CAH3040998.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F1QB30E3 ubiquitin-protein ligase AMFR OS=Danio rerio OX=7955 GN=amfra PE=1 SV=1
Q9UKV5E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2
Q9R049E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006375 (this species only)
Ubiquitin familyUBD|Alpha-Helix|CUE · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan
PF02845
all species →		CUECUE domainDomainInterproscan
PF18442
all species →		G2BRE3 gp78 Ube2g2-binding region (G2BR)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003892
all species →		DomainUbiquitin system component CUEInterproscan
IPR040675
all species →		DomainE3 ubiquitin-protein ligase AMFR, Ube2g2-binding regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15067
all species →		E3 UBIQUITIN-PROTEIN LIGASE RNF8Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0030968
all species →		Biological Processendoplasmic reticulum unfolded protein responseInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070936
all species →		Biological Processprotein K48-linked ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10636AMFR, GP78; E3 ubiquitin-protein ligase AMFREC:2.3.2.36
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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