Gene detail

Detailed information of evm.model.Ap4.6289 in Astrangia poculata

Genomic Location: Ap4:47138869...47153221
NR annotation: CAH3116089.1, unnamed protein product, partial [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6289

atgacgtcttctttacagcaagctcaagaacatggcgacctacattcatcaactaacaaattaaaagtcacaattctagcatcggaatgggggtcgactaaaggcggattgtccaccattaacagagaattagccatacagttggctaaatgccctgaagtggaaataactttctttttggcacaatgcagcgaagaggacaaaagagcggcctttggtcacaacataaccattgtcaaagcaacaagacggcctggttatgacgaattagagtggcttagctttccaccagatgatctgaatattgatgtaattgttggccatggggtgaagcttggtcgccaagcacaatttatcagaaagtcgcacaaatgcaagtgggttcaagttgtccacacagacccagaggaactaggaatgtttaaatcctacgaaaatccgatttcaaagggtgagaacaaacacaaaatagaagtagaactttgtgaaatggctgacttcactgtaggagttgggcccaagttaagcgaggcgtttcgctcatatcttcgctggtgtaaaaaagatcaaaccattcttgacatcacccctggtgtcttcaacgaatttgtgaatgttgaacacgctgctgaagagaggaaacagtgtggcgttttagtgtttggccgtggagatgctgaagattttcagttaaagggttttgacattgcaggaaaagcagttgcgcagttgaaggacactcatcttgtttttgttggtgcccctgaaggaaagcacgaggacatagcgaagcgtctggtcgagtgtggcattcctgtgagccgcctggcagtaagaagcttcctgcaaagccgagaggatttgaaaagattgttctgcgaagtggatcttgtgcttatgccttctagaacagaaggatttggcttgacaggtctagaagccttatcagctggtctcccggtgcttgtaagcaagaattcaggatttggagaagccctgcataaggtaccgtttggttcatcgtgtgtgattgattccgaggatgccaaggtatgggctgaagcaatcaatggaatctggaacaaagacagagagacgcgacttcaagaagctgaagtgttacgttcttcctacgagaagaaatacagctgggccaaacaaagtcaaggtcttgttaccaagatggccagcatcgtccaagattgccagagctcatctcacacaaaaagcggattgtcagtctcacctaccacagagggtactcagagaacgactgctgatcatgagcagcatgcaggtactcttcccaaattaacctccaccaaagaggaatccaattatgctaggttgtgtcagcttctggtcacaatgggctcaagagtcctgaaagaaacattcgaccaaattattcccccacaaaaccttcagaaacatttgaaaggcttccgagtacatgagacactgcaatcactccgaaagcaaggaatactcagtccaaaacagtggggtcaactgtatccagcgcgtgactcctcggtgtcatccaaagacttcgaccccatacttctgatggttttattgagaacagtgtgcaagttgactcctccaacagctggctgggacgcacctccccttacagcagacttgagtcctgaggctgacattgctcgtgtgagatatttcattaatactgtatttgaccatggagacaaagcctctgtttgtgatgcagtatttctgaactactgggagaacatccgggagatgctggtgagactaggaggagatggttttggagatgccgtggatgaaatgaaaaatcagaacatggaccctctcaccgaggaacactacaaggagtttttcaaacagtggaagaaaaacgaggacagcatcaaggacaaaattaatggactggagagtgcgatgaaagcttctggagaagatatatcttatccattccacgtcatagaaaggattcgccagatctacaaaacccgtgaagaacgcgttctaccagttccttggtgtgaagatttcagctttcatctaagtgagattttcaccaggctcaggattgttaacagagaaaaaacaagaggagcactgactgaggaaatcaccaacatgtcagctatcttcaaagcacatgaaggatgtcagaagccacggactgttctgattgaaggagatcctggaatgggaaagacaacctactgtcagaagctggcgtatgactgggcgaatagacaggacaaatgggacgagtctttccccgagattgaattgctgctgctgcttagatgccatgatatcaaatctaacatctgggaagctatcgatgagcaaattcttcctgacgatcttgacgaagaatcgaaagaaagctttttcaaattcattcgtgaacaacagtccaaagttttgttagtgcttgatggattagacgaagctgaccccagtaaactaccaatgtacatcaaacttgttgaaagtagagagctccccgaatgtcgcgtcattcttacatcaagacatgaagttggaatgaaatttaggcgcatctgtgataccctgtgggaaatcgttggattcacctatctagatgcacgaagtttcatcttcaagcactttaaaaacaacaaacctatggctgacaaacttctaacgaaactttatggatccgcgaaactttattgttgcgtgaacgatttgcttgatgatgtagcaagacttccttggtccattctctataggtctagacctagtcaattacgggaactgacgtcaaatcctctaaacacagctttactttgtgtactctgggaggatttcgagggtgatcttccgactagcaggactcaattgtacattgaaattgtactctgtgttttgagaagatacgaaaaaaagaaaggcctagctagcaacaacgaagaccttattaaagtttacaagaaagagcttatgtgtcttgggcatatggcgttaatttctctgcgtaaaggagagctatttattgaagaaagcgaaagtagtagcaattcgactgctttaagcaagtttggatttctgtcagtccaagctgcaggcagtagaagaaaaccctgcctgcgttacggatttcttcacaagagctttcaagagttctttgctggtttccatctcgccactaagattctcagcggagaaattgacttggatacagaagtgactgataagagatatttaagtggactgagacaagtgtttttgttcatgagtggaattgttacgtcacaatgcgaagaaactgccgtgtgtcttgtaaaaagcataactacgcatataaattgtctcggtcgcagtactccaggtagtctttttaacaagcttgaagttacagccgaaaatgtgcggttcgctttcgactgtataacggagtgtataacttgtcactgtaaagagaaccttcagtctcgattgacgagtacttttggttcccaccttgaccttgaaactttaaaattagagattagtgattgtggtttcctcttagatgcgcttacagttaataccactttaactgatttggatttaagttggaacatgattggtaactctggtgctgattcactctctaaggcccttacagtgaataccacaattactcatttgaatttgaatatggacgggattggtgattctggtgctggttctctctctaaagccctttcagtgaataccacaattactcatttgaatttgagtatgaacgggattggtgattctggtgctggttctctctctaaggccctttcagtgaataccactattactcatttgaatttgaataggatctggattggtgattctggtgctggttcactctctgatgttcttacagtgaatagcaaacttacccttttgaatttgggtaacaacagtattggtgattctggtgctggtttcctcactaaggctcttgcagtaaataccacattgactcatttgaatttgagtgggaacaagattggtgattctggtgctggttccctctctgagacccttacagtgaataccacattgagtcatttgaatttgagtgggaacaagattggtgattctggtgctggttccctctctgaggcccttacagtgaataccacattgagtcatttgaatttgagtgggaacaagattggtgattctggtgctggttccctctctgaggcccttacagtgaataccacattgagtcatttgaatttgagtgggaacaagattggtgattctggtgctggttccctctctgaggcccttacagtaaataccacattgacttatttgaatttgagtcggaagaaccgagggtcttctctgcgacaagtttttcaaatgacgtacagccgccatattgaaagtggagtagaccctgaaaacgaggttgggaagaagattggtgattctggtgctggtttcctctctaaggctcttacaaagaataccacattgattcatttggatttgagtgggaacgggattggtgattctggtgctggttcactctctagggctcttactgttaataccacaattactgatttgaatttgagagcgaacaagattcgtcattctggtgctggtttcctgtgtaggtctcttgcagtgaataccacattgactcgtttggatttgaggttcaacagtattggtcctacttgtcgcgcttacctgtcagatgcacaaacagtcaaaggcacctgcagggtagagctcgaacctcaacgctttgatgatttttaa

Transcript

evm.model.Ap4.6289

ATGACGTCTTCTTTACAGCAAGCTCAAGAACATGGCGACCTACATTCATCAACTAACAAATTAAAAGTCACAATTCTAGCATCGGAATGGGGGTCGACTAAAGGCGGATTGTCCACCATTAACAGAGAATTAGCCATACAGTTGGCTAAATGCCCTGAAGTGGAAATAACTTTCTTTTTGGCACAATGCAGCGAAGAGGACAAAAGAGCGGCCTTTGGTCACAACATAACCATTGTCAAAGCAACAAGACGGCCTGGTTATGACGAATTAGAGTGGCTTAGCTTTCCACCAGATGATCTGAATATTGATGTAATTGTTGGCCATGGGGTGAAGCTTGGTCGCCAAGCACAATTTATCAGAAAGTCGCACAAATGCAAGTGGGTTCAAGTTGTCCACACAGACCCAGAGGAACTAGGAATGTTTAAATCCTACGAAAATCCGATTTCAAAGGGTGAGAACAAACACAAAATAGAAGTAGAACTTTGTGAAATGGCTGACTTCACTGTAGGAGTTGGGCCCAAGTTAAGCGAGGCGTTTCGCTCATATCTTCGCTGGTGTAAAAAAGATCAAACCATTCTTGACATCACCCCTGGTGTCTTCAACGAATTTGTGAATGTTGAACACGCTGCTGAAGAGAGGAAACAGTGTGGCGTTTTAGTGTTTGGCCGTGGAGATGCTGAAGATTTTCAGTTAAAGGGTTTTGACATTGCAGGAAAAGCAGTTGCGCAGTTGAAGGACACTCATCTTGTTTTTGTTGGTGCCCCTGAAGGAAAGCACGAGGACATAGCGAAGCGTCTGGTCGAGTGTGGCATTCCTGTGAGCCGCCTGGCAGTAAGAAGCTTCCTGCAAAGCCGAGAGGATTTGAAAAGATTGTTCTGCGAAGTGGATCTTGTGCTTATGCCTTCTAGAACAGAAGGATTTGGCTTGACAGGTCTAGAAGCCTTATCAGCTGGTCTCCCGGTGCTTGTAAGCAAGAATTCAGGATTTGGAGAAGCCCTGCATAAGGTACCGTTTGGTTCATCGTGTGTGATTGATTCCGAGGATGCCAAGGTATGGGCTGAAGCAATCAATGGAATCTGGAACAAAGACAGAGAGACGCGACTTCAAGAAGCTGAAGTGTTACGTTCTTCCTACGAGAAGAAATACAGCTGGGCCAAACAAAGTCAAGGTCTTGTTACCAAGATGGCCAGCATCGTCCAAGATTGCCAGAGCTCATCTCACACAAAAAGCGGATTGTCAGTCTCACCTACCACAGAGGGTACTCAGAGAACGACTGCTGATCATGAGCAGCATGCAGGTACTCTTCCCAAATTAACCTCCACCAAAGAGGAATCCAATTATGCTAGGTTGTGTCAGCTTCTGGTCACAATGGGCTCAAGAGTCCTGAAAGAAACATTCGACCAAATTATTCCCCCACAAAACCTTCAGAAACATTTGAAAGGCTTCCGAGTACATGAGACACTGCAATCACTCCGAAAGCAAGGAATACTCAGTCCAAAACAGTGGGGTCAACTGTATCCAGCGCGTGACTCCTCGGTGTCATCCAAAGACTTCGACCCCATACTTCTGATGGTTTTATTGAGAACAGTGTGCAAGTTGACTCCTCCAACAGCTGGCTGGGACGCACCTCCCCTTACAGCAGACTTGAGTCCTGAGGCTGACATTGCTCGTGTGAGATATTTCATTAATACTGTATTTGACCATGGAGACAAAGCCTCTGTTTGTGATGCAGTATTTCTGAACTACTGGGAGAACATCCGGGAGATGCTGGTGAGACTAGGAGGAGATGGTTTTGGAGATGCCGTGGATGAAATGAAAAATCAGAACATGGACCCTCTCACCGAGGAACACTACAAGGAGTTTTTCAAACAGTGGAAGAAAAACGAGGACAGCATCAAGGACAAAATTAATGGACTGGAGAGTGCGATGAAAGCTTCTGGAGAAGATATATCTTATCCATTCCACGTCATAGAAAGGATTCGCCAGATCTACAAAACCCGTGAAGAACGCGTTCTACCAGTTCCTTGGTGTGAAGATTTCAGCTTTCATCTAAGTGAGATTTTCACCAGGCTCAGGATTGTTAACAGAGAAAAAACAAGAGGAGCACTGACTGAGGAAATCACCAACATGTCAGCTATCTTCAAAGCACATGAAGGATGTCAGAAGCCACGGACTGTTCTGATTGAAGGAGATCCTGGAATGGGAAAGACAACCTACTGTCAGAAGCTGGCGTATGACTGGGCGAATAGACAGGACAAATGGGACGAGTCTTTCCCCGAGATTGAATTGCTGCTGCTGCTTAGATGCCATGATATCAAATCTAACATCTGGGAAGCTATCGATGAGCAAATTCTTCCTGACGATCTTGACGAAGAATCGAAAGAAAGCTTTTTCAAATTCATTCGTGAACAACAGTCCAAAGTTTTGTTAGTGCTTGATGGATTAGACGAAGCTGACCCCAGTAAACTACCAATGTACATCAAACTTGTTGAAAGTAGAGAGCTCCCCGAATGTCGCGTCATTCTTACATCAAGACATGAAGTTGGAATGAAATTTAGGCGCATCTGTGATACCCTGTGGGAAATCGTTGGATTCACCTATCTAGATGCACGAAGTTTCATCTTCAAGCACTTTAAAAACAACAAACCTATGGCTGACAAACTTCTAACGAAACTTTATGGATCCGCGAAACTTTATTGTTGCGTGAACGATTTGCTTGATGATGTAGCAAGACTTCCTTGGTCCATTCTCTATAGGTCTAGACCTAGTCAATTACGGGAACTGACGTCAAATCCTCTAAACACAGCTTTACTTTGTGTACTCTGGGAGGATTTCGAGGGTGATCTTCCGACTAGCAGGACTCAATTGTACATTGAAATTGTACTCTGTGTTTTGAGAAGATACGAAAAAAAGAAAGGCCTAGCTAGCAACAACGAAGACCTTATTAAAGTTTACAAGAAAGAGCTTATGTGTCTTGGGCATATGGCGTTAATTTCTCTGCGTAAAGGAGAGCTATTTATTGAAGAAAGCGAAAGTAGTAGCAATTCGACTGCTTTAAGCAAGTTTGGATTTCTGTCAGTCCAAGCTGCAGGCAGTAGAAGAAAACCCTGCCTGCGTTACGGATTTCTTCACAAGAGCTTTCAAGAGTTCTTTGCTGGTTTCCATCTCGCCACTAAGATTCTCAGCGGAGAAATTGACTTGGATACAGAAGTGACTGATAAGAGATATTTAAGTGGACTGAGACAAGTGTTTTTGTTCATGAGTGGAATTGTTACGTCACAATGCGAAGAAACTGCCGTGTGTCTTGTAAAAAGCATAACTACGCATATAAATTGTCTCGGTCGCAGTACTCCAGGTAGTCTTTTTAACAAGCTTGAAGTTACAGCCGAAAATGTGCGGTTCGCTTTCGACTGTATAACGGAGTGTATAACTTGTCACTGTAAAGAGAACCTTCAGTCTCGATTGACGAGTACTTTTGGTTCCCACCTTGACCTTGAAACTTTAAAATTAGAGATTAGTGATTGTGGTTTCCTCTTAGATGCGCTTACAGTTAATACCACTTTAACTGATTTGGATTTAAGTTGGAACATGATTGGTAACTCTGGTGCTGATTCACTCTCTAAGGCCCTTACAGTGAATACCACAATTACTCATTTGAATTTGAATATGGACGGGATTGGTGATTCTGGTGCTGGTTCTCTCTCTAAAGCCCTTTCAGTGAATACCACAATTACTCATTTGAATTTGAGTATGAACGGGATTGGTGATTCTGGTGCTGGTTCTCTCTCTAAGGCCCTTTCAGTGAATACCACTATTACTCATTTGAATTTGAATAGGATCTGGATTGGTGATTCTGGTGCTGGTTCACTCTCTGATGTTCTTACAGTGAATAGCAAACTTACCCTTTTGAATTTGGGTAACAACAGTATTGGTGATTCTGGTGCTGGTTTCCTCACTAAGGCTCTTGCAGTAAATACCACATTGACTCATTTGAATTTGAGTGGGAACAAGATTGGTGATTCTGGTGCTGGTTCCCTCTCTGAGACCCTTACAGTGAATACCACATTGAGTCATTTGAATTTGAGTGGGAACAAGATTGGTGATTCTGGTGCTGGTTCCCTCTCTGAGGCCCTTACAGTGAATACCACATTGAGTCATTTGAATTTGAGTGGGAACAAGATTGGTGATTCTGGTGCTGGTTCCCTCTCTGAGGCCCTTACAGTGAATACCACATTGAGTCATTTGAATTTGAGTGGGAACAAGATTGGTGATTCTGGTGCTGGTTCCCTCTCTGAGGCCCTTACAGTAAATACCACATTGACTTATTTGAATTTGAGTCGGAAGAACCGAGGGTCTTCTCTGCGACAAGTTTTTCAAATGACGTACAGCCGCCATATTGAAAGTGGAGTAGACCCTGAAAACGAGGTTGGGAAGAAGATTGGTGATTCTGGTGCTGGTTTCCTCTCTAAGGCTCTTACAAAGAATACCACATTGATTCATTTGGATTTGAGTGGGAACGGGATTGGTGATTCTGGTGCTGGTTCACTCTCTAGGGCTCTTACTGTTAATACCACAATTACTGATTTGAATTTGAGAGCGAACAAGATTCGTCATTCTGGTGCTGGTTTCCTGTGTAGGTCTCTTGCAGTGAATACCACATTGACTCGTTTGGATTTGAGGTTCAACAGTATTGGTCCTACTTGTCGCGCTTACCTGTCAGATGCACAAACAGTCAAAGGCACCTGCAGGGTAGAGCTCGAACCTCAACGCTTTGATGATTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A386CAB9	NACHT, LRR and PYD domains-containing protein 1 homolog OS=Danio rerio OX=7955 GN=nlrp1 PE=1 SV=1
P59046	NACHT, LRR and PYD domains-containing protein 12 OS=Homo sapiens OX=9606 GN=NLRP12 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052201 all species →	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6289.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.