Genomic Location: Ap4:47160081...47209479
NR annotation: XP_027057832.1, piezo-type mechanosensitive ion channel component 2-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6290 |
| Transcript |
| evm.model.Ap4.6290 |
| Protein |
| evm.model.Ap4.6290 |
| UniProt accession | Description |
|---|---|
| Q92508 | Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens OX=9606 GN=PIEZO1 PE=1 SV=4 |
| E2JF22 | Piezo-type mechanosensitive ion channel component 1 OS=Mus musculus OX=10090 GN=Piezo1 PE=1 SV=1 |
| Q0KL00 | Piezo-type mechanosensitive ion channel component 1 OS=Rattus norvegicus OX=10116 GN=Piezo1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002090 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15917 all species → | PIEZO | Piezo | Family | Interproscan |
| PF12166 all species → | Piezo_RRas_bdg | Piezo non-specific cation channel, R-Ras-binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027272 all species → | Family | Piezo family | Interproscan |
| IPR031805 all species → | Domain | Piezo domain | Interproscan |
| IPR031334 all species → | Domain | Piezo non-specific cation channel, R-Ras-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47049 all species → | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008381 all species → | Molecular Function | mechanosensitive monoatomic ion channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22128 | PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2 | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of evm.model.Ap4.6290 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
