Gene detail

Detailed information of evm.model.Ap4.6365 in Astrangia poculata

Genomic Location: Ap4:48163839...48167444
NR annotation: KAJ7319166.1, hypothetical protein OS493_036679 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6365

atggaagcgcaatcacaagggaaagaccatcaaattactgatctgcaaagtcgcttggataacatggaagcgcaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggctaacatacaagaacaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggctaacatacaagagcaatcacaagagaaagaccaccaaattactgatctgcaaagtcccttggataccatacaagagcaatcacaaggaaaagaccaacaaattactgatctgcaaagtcgcttggctaacctacaacagcaatcacaagagaaagaccaagaaattaccaatctgcgaagtcgcttggataccatacaagagcaatcacaagagaaagaccaagaaattactaatctgcaaagtcccttggataccatacaagagcaatcacaaggaaaagaccaagaaattactgatctgcgaagtcgcgtggataccatacaagagcaatcacaagggaaagaccaacaaattactgatctgcgaagtcgcgtggataccatacaagtgcaatcacaagggaaagaccaagaaattactgatctgcaaagtcgtttggctaacatgcaacatgaatcacaaggaaaagaccaacaaatcactgatctgcgaagtcacttggataacatacaagggcaatcacaagggaaagatcaagaaattactgatctgcgaagtcgcttggctaacatacaagaacaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggataccatacaagagcaatcacaagggaaagatcaagaaattactaatctgcgaaatagcttggataccatacaagtgcaatcacaaggaaaagaccaacaaattactaatctgcgaggtcgcttggataacatgaaagtgatagcacaagagaaagaccaagaaattactgatctgcaaagtcgcttggataacatggaagcgcaatcacaagggaaagaccaagaaattactgatctgcaaagtcgcttggataacacggaagcgcaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggctaacatacaagaacaatcacaagggaaagaccaacaaattactgatctgcgaagtaccatggataccatacaagggcaatcacaagggaaagatcaagaagttacttatctgcgaaatagcttggataccatacaagtgcaatcacaaggaaaagaccaacaaattactaatctgcgaggtcgcttggataacatgaaagtgatatcacaagggaaagaccaccaaattactgatctgcaaagtcgcttggataccatacaagagcaatcacaagggaaagaccatcaaattactgatctgcaaagtcgcttcgataacatggaagcgcaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggctaacatacaagaacaatcacaagggaaagaccaacaaattactgatctgcaaagtcgcttggataacatggaagcgcaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggctaacatacaagaacaatcacaagggaaagaccaagaaattactgatctgcgaagtcgcttggataccatacaagagcaatcacaagagaaagaccaccaaattactgatctgcaaagtcccttggataccatacaagagcaatcacaagggaaagaccaacaaattactgatctgcaaagtcgcttggctaacctacaacagcaatcacaagagaaagaccaagaaattactgatctgcaaagtcgcttggctaacctacaacagcaatcacaagagaaagaccaagaaattactgatctgcaatgtcgcttggctaacatacaagagcaatcacaagggaaagtcaaacaaattactgatctgcgaagtagcttggataacatgggagagctgtcacaagggaaagaccaagaaattacagatctgtcaagtagctgggcaataaatcgaaatgaaattactttttattctttgcttggcgaaggagcatggggtagggtctttcaggggaagtttcgccgaagtgatgtcgctgtaaaagaaatctatgagggccttctgtcaccttgtaacagagagccgtttgaggaagccgtgggcaatgtagcaagatgccgccatccttggttgttgcagtttattggagcaaccaatgatgataaagggctattgctagtgacggagctcatggaacgtagcttgagatcattatataaagagcggccactcactgaaggtgaaatttccgtcatttcgctggatgtagctcaagcacttaactacttacaccaaagcaaacccaaacccatcatccaccgttacatcagtagtgcaaatgtgttgctatggcgacagaatcaccaatggagaggcaaagtgtcagattatggcactgccgattttgtacgtgaatgcacgagagacgatcctggagctgtgatttactgtgcacctgaggcccttggtggagcagggattcaaaatatcagctgcaaggtcgatgtctacagttttggcgtacttatctgtgaaatgtacatccgtgaattgccagatccacaaagacgtcatgaacaagtcggtcactttaaaaaccggaggcttcggtcccgactgataatcccatgtctgcgaccaacgcctggatggagaccagatatggaagagattattgatgagcttgaaaaccagtttcaaggcaagtcatctttagtgtctttttag

Transcript

evm.model.Ap4.6365

ATGGAAGCGCAATCACAAGGGAAAGACCATCAAATTACTGATCTGCAAAGTCGCTTGGATAACATGGAAGCGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAACAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAGCAATCACAAGAGAAAGACCACCAAATTACTGATCTGCAAAGTCCCTTGGATACCATACAAGAGCAATCACAAGGAAAAGACCAACAAATTACTGATCTGCAAAGTCGCTTGGCTAACCTACAACAGCAATCACAAGAGAAAGACCAAGAAATTACCAATCTGCGAAGTCGCTTGGATACCATACAAGAGCAATCACAAGAGAAAGACCAAGAAATTACTAATCTGCAAAGTCCCTTGGATACCATACAAGAGCAATCACAAGGAAAAGACCAAGAAATTACTGATCTGCGAAGTCGCGTGGATACCATACAAGAGCAATCACAAGGGAAAGACCAACAAATTACTGATCTGCGAAGTCGCGTGGATACCATACAAGTGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCAAAGTCGTTTGGCTAACATGCAACATGAATCACAAGGAAAAGACCAACAAATCACTGATCTGCGAAGTCACTTGGATAACATACAAGGGCAATCACAAGGGAAAGATCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAACAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGATACCATACAAGAGCAATCACAAGGGAAAGATCAAGAAATTACTAATCTGCGAAATAGCTTGGATACCATACAAGTGCAATCACAAGGAAAAGACCAACAAATTACTAATCTGCGAGGTCGCTTGGATAACATGAAAGTGATAGCACAAGAGAAAGACCAAGAAATTACTGATCTGCAAAGTCGCTTGGATAACATGGAAGCGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCAAAGTCGCTTGGATAACACGGAAGCGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAACAATCACAAGGGAAAGACCAACAAATTACTGATCTGCGAAGTACCATGGATACCATACAAGGGCAATCACAAGGGAAAGATCAAGAAGTTACTTATCTGCGAAATAGCTTGGATACCATACAAGTGCAATCACAAGGAAAAGACCAACAAATTACTAATCTGCGAGGTCGCTTGGATAACATGAAAGTGATATCACAAGGGAAAGACCACCAAATTACTGATCTGCAAAGTCGCTTGGATACCATACAAGAGCAATCACAAGGGAAAGACCATCAAATTACTGATCTGCAAAGTCGCTTCGATAACATGGAAGCGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAACAATCACAAGGGAAAGACCAACAAATTACTGATCTGCAAAGTCGCTTGGATAACATGGAAGCGCAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGCTAACATACAAGAACAATCACAAGGGAAAGACCAAGAAATTACTGATCTGCGAAGTCGCTTGGATACCATACAAGAGCAATCACAAGAGAAAGACCACCAAATTACTGATCTGCAAAGTCCCTTGGATACCATACAAGAGCAATCACAAGGGAAAGACCAACAAATTACTGATCTGCAAAGTCGCTTGGCTAACCTACAACAGCAATCACAAGAGAAAGACCAAGAAATTACTGATCTGCAAAGTCGCTTGGCTAACCTACAACAGCAATCACAAGAGAAAGACCAAGAAATTACTGATCTGCAATGTCGCTTGGCTAACATACAAGAGCAATCACAAGGGAAAGTCAAACAAATTACTGATCTGCGAAGTAGCTTGGATAACATGGGAGAGCTGTCACAAGGGAAAGACCAAGAAATTACAGATCTGTCAAGTAGCTGGGCAATAAATCGAAATGAAATTACTTTTTATTCTTTGCTTGGCGAAGGAGCATGGGGTAGGGTCTTTCAGGGGAAGTTTCGCCGAAGTGATGTCGCTGTAAAAGAAATCTATGAGGGCCTTCTGTCACCTTGTAACAGAGAGCCGTTTGAGGAAGCCGTGGGCAATGTAGCAAGATGCCGCCATCCTTGGTTGTTGCAGTTTATTGGAGCAACCAATGATGATAAAGGGCTATTGCTAGTGACGGAGCTCATGGAACGTAGCTTGAGATCATTATATAAAGAGCGGCCACTCACTGAAGGTGAAATTTCCGTCATTTCGCTGGATGTAGCTCAAGCACTTAACTACTTACACCAAAGCAAACCCAAACCCATCATCCACCGTTACATCAGTAGTGCAAATGTGTTGCTATGGCGACAGAATCACCAATGGAGAGGCAAAGTGTCAGATTATGGCACTGCCGATTTTGTACGTGAATGCACGAGAGACGATCCTGGAGCTGTGATTTACTGTGCACCTGAGGCCCTTGGTGGAGCAGGGATTCAAAATATCAGCTGCAAGGTCGATGTCTACAGTTTTGGCGTACTTATCTGTGAAATGTACATCCGTGAATTGCCAGATCCACAAAGACGTCATGAACAAGTCGGTCACTTTAAAAACCGGAGGCTTCGGTCCCGACTGATAATCCCATGTCTGCGACCAACGCCTGGATGGAGACCAGATATGGAAGAGATTATTGATGAGCTTGAAAACCAGTTTCAAGGCAAGTCATCTTTAGTGTCTTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q23915	Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum OX=44689 GN=kinX PE=3 SV=2
Q54N73	Seven transmembrane domain-containing tyrosine-protein kinase 1 OS=Dictyostelium discoideum OX=44689 GN=7tmk1 PE=3 SV=1
Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana OX=3702 GN=At1g35710 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000208 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF10174 all species →	Cast	RIM-binding protein of the cytomatrix active zone	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR019323 all species →	Family	Active zone protein ELKS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44281 all species →	SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6365.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.