Detailed information of evm.model.Ap4.637 in Astrangia poculata

Genomic Location: Ap4:6794115...6802413
NR annotation: KAJ7381028.1, AMSH-like protease [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8R424STAM-binding protein OS=Rattus norvegicus OX=10116 GN=Stambp PE=2 SV=1
Q9CQ26STAM-binding protein OS=Mus musculus OX=10090 GN=Stambp PE=1 SV=1
Q6TH47STAM-binding protein-like A OS=Danio rerio OX=7955 GN=stambpa PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005538 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08969
all species →		USP8_dimerUSP8 dimerisation domainDomainInterproscan
PF01398
all species →		JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037518
all species →		DomainMPN domainInterproscan
IPR000555
all species →		DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR015063
all species →		DomainUSP8 dimerisation domainInterproscan
IPR044098
all species →		DomainSTAMBP/STALP-like, MPN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12947
all species →		AMSH-LIKE PROTEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008233
all species →		Molecular Functionpeptidase activityInterproscan
GO:0008237
all species →		Molecular Functionmetallopeptidase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0061578
all species →		Molecular FunctionK63-linked deubiquitinase activityInterproscan
GO:0070536
all species →		Biological Processprotein K63-linked deubiquitinationInterproscan
GO:0140492
all species →		Molecular Functionmetal-dependent deubiquitinase activityInterproscan
GO:0005768
all species →		Cellular ComponentendosomeInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11866STAMBP, AMSH; STAM-binding proteinEC:3.4.19.12
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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