Detailed information of evm.model.Ap4.6373 in Astrangia poculata

Genomic Location: Ap4:48273818...48293633
NR annotation: KAJ7319157.1, hypothetical protein OS493_036670 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O08852Polycystin-1 OS=Mus musculus OX=10090 GN=Pkd1 PE=1 SV=2
Q9Z0T6Polycystin family receptor for egg jelly OS=Mus musculus OX=10090 GN=Pkdrej PE=2 SV=2
Q9NTG1Polycystin family receptor for egg jelly OS=Homo sapiens OX=9606 GN=PKDREJ PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005667 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan
PF20519
all species →
Polycystin_domPolycystin domainDomainInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR014010
all species →
DomainREJ domainInterproscan
IPR046791
all species →
DomainPolycystin domainInterproscan
IPR000434
all species →
FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46730
all species →
POLYCYSTIN-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005261
all species →
Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006816
all species →
Biological Processcalcium ion transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.6373.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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