Gene detail

Detailed information of evm.model.Ap4.638 in Astrangia poculata

Genomic Location: Ap4:6808805...6826812
NR annotation: XP_020612834.1, PH and SEC7 domain-containing protein 1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.638

atgcagaaaggaacaaccacaagcaatagcactgacgatgtcagaactgttggccgcatgagtttgataggattagaggagggtgttgatggtattttttccagaagaaagcaagaccatgttgtagaaagggtgatcacagactttcctgtgtataataataatccttcaagcaggactgataaaattaaaagacccgaaagttataaaagaaagagctatcccaatgaagggcgtagaactagtagagaatctttaccaaagagctgcataaactgtggacaacccattgattctccgaaagacatggactacaatccatcaacagaatcatctgcgtcagaatatttaacttgtagaaaatgtgggcatgtcaggaaatattcttctagtggaagtagccttcctggtaccccctattctggccatagaacattagaaacctctccttttgcactacccacaaaaaatgcatctcactcaccaactaaactcaatggaaatctaaattacaaacttgcctattcaaatggcgatagtgaacctccatcagtcaagagtaaaggggctcctactgagtctaaggcaattttaaatggaggagttaaaactgaacaagttgtgagtaaaatttctgaaggattacctcctgatactgctggacgagagtacaatgacttgcaatacgagagtccgtctgctttagcacaaagactgtttaactttgatggctttaccagggaagaggttgcacctgtgctttgcaaaaatacaacttatgggaagtcagtggctactgaataccttaaattctttgattttcaaaatgagagtatcacacaagccctacagaagttccttaaagcattccacttgactggtgaaacacaagagagagagagaattctaattcctttttcaaaaagatatcatgaatgtaacaatcctgagtatggctcagaagatgcaactcatactttagtgtgtgctgtccttctgctaaactctgatctccatggtgagaacatgcataaaaagatgacgcaagcacagtttatagagaatctgtcagaattgtgtgacggaaaggactttcctaaagatttgctaaaggcaatgtaccaggaaatcaagaccaaacccctggagggatttggttctacagagaggacaccaacaccaactccatccaagaggactcttacacctaatggcacaaagggaagtcagggaaatccctttatagagattcaagccagtgatactgacaaagtctacaaagaaggcctactgtacagaaaagtcaccatgggctcagaaggaaagaaaacttcagcttggaaaagaaaatggatgccattttatgcaaccctcaaagggatgattctctttcttcacaagtcagatgaaatgaccagtccagaacatacaagaaactgtctaggtgtacatcactccttagccagtcgagctacagattatgtcaaaaggccttgtgtcttgagatttgtcaccgccgactggagagagttcctttttcaagcaaagaaccaacatgacatgaatgagtggatagaagcaatcaatcttgtagctgccacatactcagccccgcccttaccagcgcctgttggttcatgcaaaaagtttcagcgtccagttcttccattttcccgcactcagttgtctcttattaaacaactacaacatcatgaagccaagagtaaagaagcagaggagcaactcattgaaagtttacaaagtaaaccaaagaatggctcagcgagagaacaagaggagtggcaggaaaaacatgagttcctggagcatgagtacaaaagatacaagacatacgtgaacattctgcacggatcaaagctggagagtaaattaagagacaagccacgtggttctggcaggtcggttgactctatcatgttacagatgaagcgctgtagctcccttggggatttagatatttctagtggatacaaagggaggaatgtacgagaaagctactttatggcaatttacaagtga

Transcript

evm.model.Ap4.638

ATTCGCGACACACAAGATAACTTGAAACTCCGACTAAGGGATGACCCTGGGACCAGGGATCGTGCTCGACCTTACCTCAGACCCTTTACAGTAGCTGATCCTAAACTAGCAATCTGTCAAGCAAGACTCAAGAGATCTGCTTCTGCACCACAACATCCACGTAACCGTGCTCACACTGATCAACTTCCCAGGAAAAACTTCAAAAAGAAGGAAGAGAAAAATATGCAGAAAGGAACAACCACAAGCAATAGCACTGACGATGTCAGAACTGTTGGCCGCATGAGTTTGATAGGATTAGAGGAGGGTGTTGATGGTATTTTTTCCAGAAGAAAGCAAGACCATGTTGTAGAAAGGGTGATCACAGACTTTCCTGTGTATAATAATAATCCTTCAAGCAGGACTGATAAAATTAAAAGACCCGAAAGTTATAAAAGAAAGAGCTATCCCAATGAAGGGCGTAGAACTAGTAGAGAATCTTTACCAAAGAGCTGCATAAACTGTGGACAACCCATTGATTCTCCGAAAGACATGGACTACAATCCATCAACAGAATCATCTGCGTCAGAATATTTAACTTGTAGAAAATGTGGGCATGTCAGGAAATATTCTTCTAGTGGAAGTAGCCTTCCTGGTACCCCCTATTCTGGCCATAGAACATTAGAAACCTCTCCTTTTGCACTACCCACAAAAAATGCATCTCACTCACCAACTAAACTCAATGGAAATCTAAATTACAAACTTGCCTATTCAAATGGCGATAGTGAACCTCCATCAGTCAAGAGTAAAGGGGCTCCTACTGAGTCTAAGGCAATTTTAAATGGAGGAGTTAAAACTGAACAAGTTGTGAGTAAAATTTCTGAAGGATTACCTCCTGATACTGCTGGACGAGAGTACAATGACTTGCAATACGAGAGTCCGTCTGCTTTAGCACAAAGACTGTTTAACTTTGATGGCTTTACCAGGGAAGAGGTTGCACCTGTGCTTTGCAAAAATACAACTTATGGGAAGTCAGTGGCTACTGAATACCTTAAATTCTTTGATTTTCAAAATGAGAGTATCACACAAGCCCTACAGAAGTTCCTTAAAGCATTCCACTTGACTGGTGAAACACAAGAGAGAGAGAGAATTCTAATTCCTTTTTCAAAAAGATATCATGAATGTAACAATCCTGAGTATGGCTCAGAAGATGCAACTCATACTTTAGTGTGTGCTGTCCTTCTGCTAAACTCTGATCTCCATGGTGAGAACATGCATAAAAAGATGACGCAAGCACAGTTTATAGAGAATCTGTCAGAATTGTGTGACGGAAAGGACTTTCCTAAAGATTTGCTAAAGGCAATGTACCAGGAAATCAAGACCAAACCCCTGGAGGGATTTGGTTCTACAGAGAGGACACCAACACCAACTCCATCCAAGAGGACTCTTACACCTAATGGCACAAAGGGAAGTCAGGGAAATCCCTTTATAGAGATTCAAGCCAGTGATACTGACAAAGTCTACAAAGAAGGCCTACTGTACAGAAAAGTCACCATGGGCTCAGAAGGAAAGAAAACTTCAGCTTGGAAAAGAAAATGGATGCCATTTTATGCAACCCTCAAAGGGATGATTCTCTTTCTTCACAAGTCAGATGAAATGACCAGTCCAGAACATACAAGAAACTGTCTAGGTGTACATCACTCCTTAGCCAGTCGAGCTACAGATTATGTCAAAAGGCCTTGTGTCTTGAGATTTGTCACCGCCGACTGGAGAGAGTTCCTTTTTCAAGCAAAGAACCAACATGACATGAATGAGTGGATAGAAGCAATCAATCTTGTAGCTGCCACATACTCAGCCCCGCCCTTACCAGCGCCTGTTGGTTCATGCAAAAAGTTTCAGCGTCCAGTTCTTCCATTTTCCCGCACTCAGTTGTCTCTTATTAAACAACTACAACATCATGAAGCCAAGAGTAAAGAAGCAGAGGAGCAACTCATTGAAAGTTTACAAAGTAAACCAAAGAATGGCTCAGCGAGAGAACAAGAGGAGTGGCAGGAAAAACATGAGTTCCTGGAGCATGAGTACAAAAGATACAAGACATACGTGAACATTCTGCACGGATCAAAGCTGGAGAGTAAATTAAGAGACAAGCCACGTGGTTCTGGCAGGTCGGTTGACTCTATCATGTTACAGATGAAGCGCTGTAGCTCCCTTGGGGATTTAGATATTTCTAGTGGATACAAAGGGAGGAATGTACGAGAAAGCTACTTTATGGCAATTTACAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NYI0	PH and SEC7 domain-containing protein 3 OS=Homo sapiens OX=9606 GN=PSD3 PE=1 SV=2
Q2PFD7	PH and SEC7 domain-containing protein 3 OS=Mus musculus OX=10090 GN=Psd3 PE=1 SV=2
Q9ESQ7	PH and SEC7 domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Psd PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15410 all species →	PH_9	Pleckstrin homology domain	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041681 all species →	Domain	Pleckstrin homology domain 9	Interproscan
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR001605 all species →	Domain	Pleckstrin homology domain, spectrin-type	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12494	PSD; PH and SEC7 domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.