Genomic Location: Ap4:48403992...48423630
NR annotation: XP_020622601.1, apoptotic chromatin condensation inducer in the nucleus-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6382 |
| Transcript |
| evm.model.Ap4.6382 |
| Protein |
| evm.model.Ap4.6382 |
| UniProt accession | Description |
|---|---|
| Q9JIX8 | Apoptotic chromatin condensation inducer in the nucleus OS=Mus musculus OX=10090 GN=Acin1 PE=1 SV=3 |
| Q9UKV3 | Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens OX=9606 GN=ACIN1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004284 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16294 all species → | RSB_motif | RNSP1-SAP18 binding (RSB) motif | Motif | Interproscan |
| PF02037 all species → | SAP | SAP domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR032552 all species → | Conserved_site | Acin1, RNSP1-SAP18 binding (RSB) motif | Interproscan |
| IPR003034 all species → | Domain | SAP domain | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR034257 all species → | Domain | Acinus, RNA recognition motif | Interproscan |
| IPR036361 all species → | Homologous_superfamily | SAP domain superfamily | Interproscan |
| IPR052793 all species → | Family | Exon junction complex-associated protein | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46589 all species → | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0008380 all species → | Biological Process | RNA splicing | Interproscan |
| GO:0061574 all species → | Cellular Component | ASAP complex | Interproscan |
| GO:0071011 all species → | Cellular Component | precatalytic spliceosome | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12875 | ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of evm.model.Ap4.6382 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
